Hb_012733_070

Information

Type -
Description -
Location Contig12733: 95070-96652
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb017687mg
description hypothetical protein
nr
ID XP_012072631.1
description PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L135
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06696 PE=4 SV=1
Gene Ontology
ID GO:0000166
description atp-dependent clp protease atp-binding subunit clpx- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08350: 68781-96490 , PASA_asmbl_08352: 96580-96768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012733_070 0.0 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
2 Hb_012330_010 0.056071678 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
3 Hb_002968_080 0.0621385944 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
4 Hb_001348_080 0.0655822122 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
5 Hb_028960_020 0.0715262352 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
6 Hb_003280_020 0.0733804384 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
7 Hb_065500_020 0.0738337295 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
8 Hb_005725_130 0.0763899091 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
9 Hb_002749_060 0.0764575903 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
10 Hb_000001_170 0.0767334936 - - amino acid transporter, putative [Ricinus communis]
11 Hb_002471_240 0.077067482 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
12 Hb_000238_030 0.0772690356 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000163_090 0.0780684535 - - gamma-tubulin complex component, putative [Ricinus communis]
14 Hb_055062_040 0.0790683216 - - ceramidase, putative [Ricinus communis]
15 Hb_008511_020 0.0799287314 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
16 Hb_102698_010 0.0808034713 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
17 Hb_060980_010 0.0809086527 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
18 Hb_000409_050 0.0823279407 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
19 Hb_030982_010 0.0830984409 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000836_460 0.0839134164 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]

Gene co-expression network

sample Hb_012733_070 Hb_012733_070 Hb_012330_010 Hb_012330_010 Hb_012733_070--Hb_012330_010 Hb_002968_080 Hb_002968_080 Hb_012733_070--Hb_002968_080 Hb_001348_080 Hb_001348_080 Hb_012733_070--Hb_001348_080 Hb_028960_020 Hb_028960_020 Hb_012733_070--Hb_028960_020 Hb_003280_020 Hb_003280_020 Hb_012733_070--Hb_003280_020 Hb_065500_020 Hb_065500_020 Hb_012733_070--Hb_065500_020 Hb_012330_010--Hb_003280_020 Hb_012330_010--Hb_001348_080 Hb_008511_020 Hb_008511_020 Hb_012330_010--Hb_008511_020 Hb_002749_060 Hb_002749_060 Hb_012330_010--Hb_002749_060 Hb_002027_080 Hb_002027_080 Hb_012330_010--Hb_002027_080 Hb_004668_090 Hb_004668_090 Hb_002968_080--Hb_004668_090 Hb_179306_020 Hb_179306_020 Hb_002968_080--Hb_179306_020 Hb_000110_190 Hb_000110_190 Hb_002968_080--Hb_000110_190 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090 Hb_001348_080--Hb_028960_020 Hb_006483_110 Hb_006483_110 Hb_001348_080--Hb_006483_110 Hb_001348_080--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_001348_080--Hb_001518_080 Hb_007426_110 Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_028960_020--Hb_006483_110 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_004048_120 Hb_004048_120 Hb_003280_020--Hb_004048_120 Hb_003280_020--Hb_002749_060 Hb_002025_330 Hb_002025_330 Hb_003280_020--Hb_002025_330 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_000261_480 Hb_000261_480 Hb_003280_020--Hb_000261_480 Hb_060980_010 Hb_060980_010 Hb_065500_020--Hb_060980_010 Hb_065500_020--Hb_002749_060 Hb_016172_030 Hb_016172_030 Hb_065500_020--Hb_016172_030 Hb_065500_020--Hb_011819_020 Hb_021165_010 Hb_021165_010 Hb_065500_020--Hb_021165_010 Hb_008289_040 Hb_008289_040 Hb_065500_020--Hb_008289_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16211 3.00931 5.13318 5.78251 3.47611 4.38914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06408 2.15612 2.79241 6.84269 5.94684

CAGE analysis