Hb_006831_040

Information

Type -
Description -
Location Contig6831: 14269-24400
Sequence    

Annotation

kegg
ID rcu:RCOM_0820360
description nucleotide binding protein, putative
nr
ID XP_012082220.1
description PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LTT8
description Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS PE=1 SV=1
trembl
ID A0A067JYI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53907: 11012-13474 , PASA_asmbl_53909: 13862-13975 , PASA_asmbl_53911: 14924-21789 , PASA_asmbl_53914: 23866-24321
cDNA
(Sanger)
(ID:Location)		 032_C23.ab1: 11166-13277 , 039_F01.ab1: 11155-13331 , 048_J07.ab1: 11155-13361

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_040 0.0 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
2 Hb_001761_130 0.0608539516 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
3 Hb_172632_110 0.0621908408 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
4 Hb_010174_110 0.0690667034 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
5 Hb_002740_110 0.0697260931 - - PREDICTED: phytochrome A [Jatropha curcas]
6 Hb_004994_220 0.0729019851 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
7 Hb_004117_310 0.0805749906 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
8 Hb_000002_010 0.0839726217 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
9 Hb_002110_030 0.0858182593 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
10 Hb_000890_210 0.0872478015 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
11 Hb_004032_380 0.0890458077 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
12 Hb_000856_310 0.0901229622 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
13 Hb_017358_040 0.0909096158 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
14 Hb_001021_080 0.0921978188 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
15 Hb_000028_280 0.0924185192 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
16 Hb_000107_490 0.0933115065 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_000377_090 0.0942959655 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
18 Hb_003253_040 0.0945446839 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_001913_060 0.0953583596 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
20 Hb_000703_150 0.0954162935 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_006831_040 Hb_006831_040 Hb_001761_130 Hb_001761_130 Hb_006831_040--Hb_001761_130 Hb_172632_110 Hb_172632_110 Hb_006831_040--Hb_172632_110 Hb_010174_110 Hb_010174_110 Hb_006831_040--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_006831_040--Hb_002740_110 Hb_004994_220 Hb_004994_220 Hb_006831_040--Hb_004994_220 Hb_004117_310 Hb_004117_310 Hb_006831_040--Hb_004117_310 Hb_001761_130--Hb_172632_110 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_002477_090 Hb_002477_090 Hb_001761_130--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_001761_130--Hb_010174_110 Hb_172632_110--Hb_010174_110 Hb_001021_080 Hb_001021_080 Hb_172632_110--Hb_001021_080 Hb_002391_210 Hb_002391_210 Hb_172632_110--Hb_002391_210 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_010174_110--Hb_004994_220 Hb_002740_110--Hb_003253_040 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_002740_110--Hb_004143_130 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_000343_120 Hb_000343_120 Hb_004117_310--Hb_000343_120 Hb_004117_310--Hb_000890_210 Hb_004117_310--Hb_010174_110 Hb_004117_310--Hb_001341_170 Hb_004117_310--Hb_000107_490 Hb_004117_310--Hb_002740_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4255 21.6649 5.06593 12.8305 19.849 18.2906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1839 10.798 19.5284 27.6512 10.7521

CAGE analysis