Hb_004117_310

Information

Type -
Description -
Location Contig4117: 213048-222038
Sequence    

Annotation

kegg
ID tcc:TCM_019727
description NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein, putative
nr
ID XP_012089694.1
description PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00363 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40785: 212825-221907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_310 0.0 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
2 Hb_000343_120 0.0677663844 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
3 Hb_000890_210 0.0701810924 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
4 Hb_010174_110 0.0719462009 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
5 Hb_001341_170 0.0723029005 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
6 Hb_000107_490 0.0741653125 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
7 Hb_002740_110 0.0786616383 - - PREDICTED: phytochrome A [Jatropha curcas]
8 Hb_001199_100 0.079109269 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
9 Hb_000028_280 0.0792039837 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
10 Hb_004032_380 0.0801054782 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
11 Hb_006831_040 0.0805749906 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
12 Hb_000166_130 0.0835092071 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004143_130 0.0836160032 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
14 Hb_002111_070 0.0837873922 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
15 Hb_000457_260 0.0846361456 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
16 Hb_000245_040 0.0847736422 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
17 Hb_000173_490 0.0848559893 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
18 Hb_004602_040 0.0854582738 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
19 Hb_123352_020 0.0856286979 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
20 Hb_000703_150 0.0857297469 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_004117_310 Hb_004117_310 Hb_000343_120 Hb_000343_120 Hb_004117_310--Hb_000343_120 Hb_000890_210 Hb_000890_210 Hb_004117_310--Hb_000890_210 Hb_010174_110 Hb_010174_110 Hb_004117_310--Hb_010174_110 Hb_001341_170 Hb_001341_170 Hb_004117_310--Hb_001341_170 Hb_000107_490 Hb_000107_490 Hb_004117_310--Hb_000107_490 Hb_002740_110 Hb_002740_110 Hb_004117_310--Hb_002740_110 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_000890_210--Hb_000107_490 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_000245_040 Hb_000245_040 Hb_000890_210--Hb_000245_040 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_010174_110--Hb_000107_490 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_004994_220 Hb_004994_220 Hb_010174_110--Hb_004994_220 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000107_490--Hb_000245_040 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_000107_490--Hb_004724_150 Hb_002740_110--Hb_003253_040 Hb_002740_110--Hb_000028_280 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_002740_110--Hb_004143_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.34037 16.2465 4.13852 8.63039 10.5891 16.7216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.5663 8.63472 13.8534 13.862 8.45866

CAGE analysis