Hb_001123_050

Information

Type -
Description -
Location Contig1123: 21021-27864
Sequence    

Annotation

kegg
ID rcu:RCOM_1437460
description hypothetical protein
nr
ID XP_002512618.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFU9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437460 PE=4 SV=1
Gene Ontology
ID GO:0044763
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03720: 20998-22536 , PASA_asmbl_03722: 25853-27555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002477_090 0.0738657174 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
3 Hb_000862_040 0.0827677924 - - ara4-interacting protein, putative [Ricinus communis]
4 Hb_000213_120 0.0859163725 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_023226_080 0.0869079081 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
6 Hb_005542_140 0.0872079001 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
7 Hb_127743_010 0.0882688103 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
8 Hb_000012_260 0.0900965146 - - Far upstream element-binding 2 [Gossypium arboreum]
9 Hb_003058_060 0.0903461189 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
10 Hb_002307_280 0.0904126928 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
11 Hb_159558_010 0.0904454329 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
12 Hb_000369_130 0.0915881962 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
13 Hb_000614_210 0.0931063686 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
14 Hb_000107_660 0.0935006025 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_004934_050 0.0939095603 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
16 Hb_001668_010 0.0951740807 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
17 Hb_001178_070 0.0953783223 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
18 Hb_001269_140 0.0955566188 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
19 Hb_032808_030 0.0961370683 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_001105_160 0.0975415306 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_050 Hb_001123_050 Hb_002477_090 Hb_002477_090 Hb_001123_050--Hb_002477_090 Hb_000862_040 Hb_000862_040 Hb_001123_050--Hb_000862_040 Hb_000213_120 Hb_000213_120 Hb_001123_050--Hb_000213_120 Hb_023226_080 Hb_023226_080 Hb_001123_050--Hb_023226_080 Hb_005542_140 Hb_005542_140 Hb_001123_050--Hb_005542_140 Hb_127743_010 Hb_127743_010 Hb_001123_050--Hb_127743_010 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_000862_040--Hb_005542_140 Hb_000059_020 Hb_000059_020 Hb_000862_040--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_032808_030 Hb_032808_030 Hb_000213_120--Hb_032808_030 Hb_000925_140 Hb_000925_140 Hb_000213_120--Hb_000925_140 Hb_000369_130 Hb_000369_130 Hb_000213_120--Hb_000369_130 Hb_000213_120--Hb_000862_040 Hb_002662_020 Hb_002662_020 Hb_000213_120--Hb_002662_020 Hb_023226_080--Hb_005542_140 Hb_000176_100 Hb_000176_100 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_159558_010 Hb_159558_010 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_009615_170 Hb_009615_170 Hb_023226_080--Hb_009615_170 Hb_005542_140--Hb_159558_010 Hb_007426_060 Hb_007426_060 Hb_005542_140--Hb_007426_060 Hb_005542_140--Hb_005568_040 Hb_001668_010 Hb_001668_010 Hb_005542_140--Hb_001668_010 Hb_127743_010--Hb_003913_070 Hb_001417_030 Hb_001417_030 Hb_127743_010--Hb_001417_030 Hb_000111_290 Hb_000111_290 Hb_127743_010--Hb_000111_290 Hb_029243_030 Hb_029243_030 Hb_127743_010--Hb_029243_030 Hb_000340_530 Hb_000340_530 Hb_127743_010--Hb_000340_530 Hb_127743_010--Hb_004934_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62549 5.93753 2.50658 4.06419 4.44248 4.01381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31388 3.65627 2.42387 6.5688 2.73374

CAGE analysis