Hb_000950_060

Information

Type -
Description -
Location Contig950: 99305-113219
Sequence    

Annotation

kegg
ID rcu:RCOM_1099830
description hypothetical protein
nr
ID XP_012086209.1
description PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
swissprot
ID Q03701
description CCAAT/enhancer-binding protein zeta OS=Homo sapiens GN=CEBPZ PE=1 SV=3
trembl
ID B9T1L2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1099830 PE=4 SV=1
Gene Ontology
ID GO:0009553
description ccaat enhancer-binding protein zeta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63397: 99365-99829 , PASA_asmbl_63398: 100099-109098 , PASA_asmbl_63399: 109373-109638 , PASA_asmbl_63400: 109648-111210 , PASA_asmbl_63401: 111386-111618 , PASA_asmbl_63402: 111663-113350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000950_060 0.0 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
2 Hb_002639_080 0.0856367186 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
3 Hb_000035_010 0.0859312261 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
4 Hb_003913_110 0.0939740157 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
5 Hb_114151_020 0.0972752851 - - glucan water dikinase 2 [Manihot esculenta]
6 Hb_000175_120 0.0981569427 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
7 Hb_001341_180 0.0989401239 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
8 Hb_002005_080 0.1003353358 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
9 Hb_000940_150 0.1019276915 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
10 Hb_004143_160 0.1021807259 - - SAB, putative [Ricinus communis]
11 Hb_009486_090 0.103017635 - - RNA binding protein, putative [Ricinus communis]
12 Hb_041327_010 0.1031232891 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
13 Hb_004048_120 0.1036028568 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
14 Hb_000340_490 0.1047758508 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
15 Hb_000684_290 0.1056353589 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
16 Hb_001431_120 0.1069590712 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
17 Hb_000069_120 0.1076391946 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
18 Hb_000106_120 0.1083299064 - - hypothetical protein glysoja_007050 [Glycine soja]
19 Hb_000022_170 0.1094023488 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
20 Hb_007632_010 0.1094859475 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000950_060 Hb_000950_060 Hb_002639_080 Hb_002639_080 Hb_000950_060--Hb_002639_080 Hb_000035_010 Hb_000035_010 Hb_000950_060--Hb_000035_010 Hb_003913_110 Hb_003913_110 Hb_000950_060--Hb_003913_110 Hb_114151_020 Hb_114151_020 Hb_000950_060--Hb_114151_020 Hb_000175_120 Hb_000175_120 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_000049_250 Hb_000049_250 Hb_000035_010--Hb_000049_250 Hb_000035_010--Hb_000175_120 Hb_009486_090 Hb_009486_090 Hb_000035_010--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_000035_010--Hb_006031_010 Hb_000035_010--Hb_114151_020 Hb_001452_220 Hb_001452_220 Hb_003913_110--Hb_001452_220 Hb_000608_230 Hb_000608_230 Hb_003913_110--Hb_000608_230 Hb_011173_030 Hb_011173_030 Hb_003913_110--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_028487_010 Hb_028487_010 Hb_003913_110--Hb_028487_010 Hb_114151_020--Hb_006031_010 Hb_000189_320 Hb_000189_320 Hb_114151_020--Hb_000189_320 Hb_114151_020--Hb_009486_090 Hb_000196_060 Hb_000196_060 Hb_114151_020--Hb_000196_060 Hb_004327_040 Hb_004327_040 Hb_114151_020--Hb_004327_040 Hb_000940_150 Hb_000940_150 Hb_000175_120--Hb_000940_150 Hb_000631_110 Hb_000631_110 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_185830_070 Hb_185830_070 Hb_000175_120--Hb_185830_070 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_004048_120 Hb_004048_120 Hb_001341_180--Hb_004048_120 Hb_027472_220 Hb_027472_220 Hb_001341_180--Hb_027472_220 Hb_003280_020 Hb_003280_020 Hb_001341_180--Hb_003280_020 Hb_005402_040 Hb_005402_040 Hb_001341_180--Hb_005402_040 Hb_001341_180--Hb_002639_080 Hb_000261_480 Hb_000261_480 Hb_001341_180--Hb_000261_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33212 8.23711 3.75416 5.78792 6.26225 8.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.77822 3.29884 3.6915 15.9982 10.5751

CAGE analysis