Hb_001452_220

Information

Type -
Description -
Location Contig1452: 341035-345305
Sequence    

Annotation

kegg
ID rcu:RCOM_0953150
description molybdopterin biosynthesis protein, putative
nr
ID XP_012066297.1
description PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
swissprot
ID Q39054
description Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=2
trembl
ID A0A067L376
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23858 PE=4 SV=1
Gene Ontology
ID GO:0005829
description molybdopterin biosynthesis protein cnx1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11727: 324168-345374 , PASA_asmbl_11728: 320814-341806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001452_220 0.0 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
2 Hb_003739_030 0.0733446084 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
3 Hb_002391_370 0.0773546096 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
4 Hb_003913_110 0.0791344715 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
5 Hb_028487_010 0.08040431 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
6 Hb_002909_090 0.0826047546 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
7 Hb_011173_030 0.0862966 - - pumilio, putative [Ricinus communis]
8 Hb_000740_100 0.086381496 - - calpain, putative [Ricinus communis]
9 Hb_005725_170 0.0926313412 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
10 Hb_000307_210 0.0932227798 - - Transportin 1 isoform 1 [Theobroma cacao]
11 Hb_001655_060 0.0933731302 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
12 Hb_003498_120 0.0949703751 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
13 Hb_001977_010 0.0999296421 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
14 Hb_000505_020 0.101357065 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
15 Hb_000010_360 0.1015427408 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
16 Hb_006573_170 0.1024168982 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003177_060 0.1046211865 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
18 Hb_002784_010 0.1046451795 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
19 Hb_000109_100 0.1046473105 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
20 Hb_000261_030 0.1060506208 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]

Gene co-expression network

sample Hb_001452_220 Hb_001452_220 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_002391_370 Hb_002391_370 Hb_001452_220--Hb_002391_370 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_028487_010 Hb_028487_010 Hb_001452_220--Hb_028487_010 Hb_002909_090 Hb_002909_090 Hb_001452_220--Hb_002909_090 Hb_011173_030 Hb_011173_030 Hb_001452_220--Hb_011173_030 Hb_000261_030 Hb_000261_030 Hb_003739_030--Hb_000261_030 Hb_000010_360 Hb_000010_360 Hb_003739_030--Hb_000010_360 Hb_009771_110 Hb_009771_110 Hb_003739_030--Hb_009771_110 Hb_002784_010 Hb_002784_010 Hb_003739_030--Hb_002784_010 Hb_148909_030 Hb_148909_030 Hb_003739_030--Hb_148909_030 Hb_001977_010 Hb_001977_010 Hb_002391_370--Hb_001977_010 Hb_000181_250 Hb_000181_250 Hb_002391_370--Hb_000181_250 Hb_002391_370--Hb_002909_090 Hb_000307_210 Hb_000307_210 Hb_002391_370--Hb_000307_210 Hb_002028_170 Hb_002028_170 Hb_002391_370--Hb_002028_170 Hb_000608_230 Hb_000608_230 Hb_003913_110--Hb_000608_230 Hb_003913_110--Hb_011173_030 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_003913_110--Hb_028487_010 Hb_028487_010--Hb_000307_210 Hb_028487_010--Hb_011173_030 Hb_001821_090 Hb_001821_090 Hb_028487_010--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_028487_010--Hb_002107_070 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030 Hb_000640_100 Hb_000640_100 Hb_002909_090--Hb_000640_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120 Hb_004545_090 Hb_004545_090 Hb_002909_090--Hb_004545_090 Hb_011173_030--Hb_000740_100 Hb_104061_020 Hb_104061_020 Hb_011173_030--Hb_104061_020 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_011173_030--Hb_001821_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.037 18.7402 9.62615 8.11634 20.1682 21.0272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.96381 4.02285 4.50961 24.5081 16.0288

CAGE analysis