Hb_002391_370

Information

Type -
Description -
Location Contig2391: 224231-231649
Sequence    

Annotation

kegg
ID rcu:RCOM_0782740
description aconitase, putative (EC:4.2.1.3)
nr
ID XP_012088458.1
description PREDICTED: aconitate hydratase 1 [Jatropha curcas]
swissprot
ID Q42560
description Aconitate hydratase 1 OS=Arabidopsis thaliana GN=ACO1 PE=1 SV=2
trembl
ID A0A067JMA6
description Aconitate hydratase OS=Jatropha curcas GN=JCGZ_25341 PE=3 SV=1
Gene Ontology
ID GO:0005773
description aconitate hydratase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25075: 224220-231593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_370 0.0 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
2 Hb_001452_220 0.0773546096 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
3 Hb_001977_010 0.0915111487 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
4 Hb_000181_250 0.1010101154 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
5 Hb_002909_090 0.1075347462 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
6 Hb_000307_210 0.1077113467 - - Transportin 1 isoform 1 [Theobroma cacao]
7 Hb_002028_170 0.1085548911 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
8 Hb_011173_030 0.1090453327 - - pumilio, putative [Ricinus communis]
9 Hb_028487_010 0.1093364369 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
10 Hb_005725_170 0.1096646798 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
11 Hb_000343_030 0.1106747317 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
12 Hb_003913_110 0.1140681747 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
13 Hb_001621_130 0.1152359177 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
14 Hb_003498_120 0.116269251 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
15 Hb_000107_040 0.118788225 - - nuclear pore complex protein nup153, putative [Ricinus communis]
16 Hb_000505_020 0.1209559985 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
17 Hb_011928_020 0.1215724062 - - something about silencing protein sas10, putative [Ricinus communis]
18 Hb_005143_030 0.1231904201 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
19 Hb_118840_030 0.1238655291 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
20 Hb_000109_100 0.1238741998 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_370 Hb_002391_370 Hb_001452_220 Hb_001452_220 Hb_002391_370--Hb_001452_220 Hb_001977_010 Hb_001977_010 Hb_002391_370--Hb_001977_010 Hb_000181_250 Hb_000181_250 Hb_002391_370--Hb_000181_250 Hb_002909_090 Hb_002909_090 Hb_002391_370--Hb_002909_090 Hb_000307_210 Hb_000307_210 Hb_002391_370--Hb_000307_210 Hb_002028_170 Hb_002028_170 Hb_002391_370--Hb_002028_170 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_028487_010 Hb_028487_010 Hb_001452_220--Hb_028487_010 Hb_001452_220--Hb_002909_090 Hb_011173_030 Hb_011173_030 Hb_001452_220--Hb_011173_030 Hb_118840_030 Hb_118840_030 Hb_001977_010--Hb_118840_030 Hb_001977_010--Hb_001452_220 Hb_001977_010--Hb_002909_090 Hb_002260_080 Hb_002260_080 Hb_001977_010--Hb_002260_080 Hb_000158_100 Hb_000158_100 Hb_001977_010--Hb_000158_100 Hb_004970_160 Hb_004970_160 Hb_000181_250--Hb_004970_160 Hb_004974_010 Hb_004974_010 Hb_000181_250--Hb_004974_010 Hb_001541_080 Hb_001541_080 Hb_000181_250--Hb_001541_080 Hb_001221_150 Hb_001221_150 Hb_000181_250--Hb_001221_150 Hb_001028_070 Hb_001028_070 Hb_000181_250--Hb_001028_070 Hb_001621_130 Hb_001621_130 Hb_000181_250--Hb_001621_130 Hb_000640_100 Hb_000640_100 Hb_002909_090--Hb_000640_100 Hb_000740_100 Hb_000740_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120 Hb_004545_090 Hb_004545_090 Hb_002909_090--Hb_004545_090 Hb_000307_210--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_000307_210--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000307_210--Hb_003058_060 Hb_000307_210--Hb_011173_030 Hb_010053_030 Hb_010053_030 Hb_000307_210--Hb_010053_030 Hb_000307_210--Hb_000740_100 Hb_011716_020 Hb_011716_020 Hb_002028_170--Hb_011716_020 Hb_003623_030 Hb_003623_030 Hb_002028_170--Hb_003623_030 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0348 29.9768 12.6866 12.6568 33.6127 45.6902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6235 5.58281 11.0132 55.3259 23.4376

CAGE analysis