Hb_002909_090

Information

Type -
Description -
Location Contig2909: 33444-49683
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02870g
description POPTRDRAFT_255128; hypothetical protein
nr
ID XP_012074687.1
description PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
swissprot
ID Q8RXD9
description 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana GN=DPE2 PE=1 SV=1
trembl
ID A0A067KLB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10848 PE=4 SV=1
Gene Ontology
ID GO:0004134
description 4-alpha-glucanotransferase dpe2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30473: 33502-49630 , PASA_asmbl_30474: 35541-41483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_090 0.0 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
2 Hb_000640_100 0.0494317141 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000740_100 0.0724059753 - - calpain, putative [Ricinus communis]
4 Hb_002815_030 0.0820545184 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
5 Hb_001452_220 0.0826047546 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
6 Hb_003498_120 0.0851477207 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
7 Hb_004545_090 0.0877983597 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001343_040 0.0893738049 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
9 Hb_008024_030 0.0902771965 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
10 Hb_000261_030 0.0905982428 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
11 Hb_143489_010 0.0913475361 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
12 Hb_000395_070 0.0913615717 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
13 Hb_127552_040 0.0916894389 - - Uncharacterized protein L484_000643 [Morus notabilis]
14 Hb_028872_070 0.0936423332 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
15 Hb_001623_480 0.0937830731 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
16 Hb_005402_040 0.094223163 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
17 Hb_004920_090 0.0943492804 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003177_060 0.0943497982 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
19 Hb_002631_140 0.0943584286 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
20 Hb_000252_050 0.0944770147 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]

Gene co-expression network

sample Hb_002909_090 Hb_002909_090 Hb_000640_100 Hb_000640_100 Hb_002909_090--Hb_000640_100 Hb_000740_100 Hb_000740_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_001452_220 Hb_001452_220 Hb_002909_090--Hb_001452_220 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120 Hb_004545_090 Hb_004545_090 Hb_002909_090--Hb_004545_090 Hb_000261_100 Hb_000261_100 Hb_000640_100--Hb_000261_100 Hb_000640_100--Hb_004545_090 Hb_000780_190 Hb_000780_190 Hb_000640_100--Hb_000780_190 Hb_008024_030 Hb_008024_030 Hb_000640_100--Hb_008024_030 Hb_127552_040 Hb_127552_040 Hb_000640_100--Hb_127552_040 Hb_002329_040 Hb_002329_040 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_002391_370 Hb_002391_370 Hb_001452_220--Hb_002391_370 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_028487_010 Hb_028487_010 Hb_001452_220--Hb_028487_010 Hb_001452_220--Hb_011173_030 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_003010_020 Hb_003010_020 Hb_004545_090--Hb_003010_020 Hb_000990_090 Hb_000990_090 Hb_004545_090--Hb_000990_090 Hb_000023_190 Hb_000023_190 Hb_004545_090--Hb_000023_190 Hb_011918_040 Hb_011918_040 Hb_004545_090--Hb_011918_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9717 13.292 8.75959 10.0979 13.624 19.6154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57103 3.69701 6.66718 19.518 16.0811

CAGE analysis