Hb_011918_040

Information

Type -
Description -
Location Contig11918: 67288-75305
Sequence    

Annotation

kegg
ID rcu:RCOM_0570000
description chaperone protein DNAj, putative
nr
ID XP_012091084.1
description PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
swissprot
ID Q7VEJ6
description Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1
trembl
ID A0A067JP27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03276 PE=3 SV=1
Gene Ontology
ID GO:0003676
description chaperone protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05671: 67601-68883 , PASA_asmbl_05672: 69254-69581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011918_040 0.0 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
2 Hb_003010_020 0.0838173049 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001416_070 0.0844520978 - - oxidoreductase, putative [Ricinus communis]
4 Hb_004545_090 0.0860629455 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000780_190 0.0972297891 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
6 Hb_029904_020 0.1017634255 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
7 Hb_041828_010 0.106045694 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
8 Hb_006909_070 0.1075429019 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_012194_050 0.1079619204 - - Aspartyl aminopeptidase, putative [Ricinus communis]
10 Hb_000990_090 0.1090623241 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_000785_040 0.1110842937 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
12 Hb_003656_180 0.1117640094 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
13 Hb_002551_070 0.1136337387 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
14 Hb_000362_150 0.1138637647 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
15 Hb_000785_080 0.1139508483 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
16 Hb_007441_130 0.1150485946 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_009193_120 0.1152297832 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_008484_010 0.1152309395 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
19 Hb_004117_160 0.116429629 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
20 Hb_102269_010 0.1165555037 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_011918_040 Hb_011918_040 Hb_003010_020 Hb_003010_020 Hb_011918_040--Hb_003010_020 Hb_001416_070 Hb_001416_070 Hb_011918_040--Hb_001416_070 Hb_004545_090 Hb_004545_090 Hb_011918_040--Hb_004545_090 Hb_000780_190 Hb_000780_190 Hb_011918_040--Hb_000780_190 Hb_029904_020 Hb_029904_020 Hb_011918_040--Hb_029904_020 Hb_041828_010 Hb_041828_010 Hb_011918_040--Hb_041828_010 Hb_003010_020--Hb_001416_070 Hb_032050_040 Hb_032050_040 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_001416_070--Hb_012194_050 Hb_001416_070--Hb_006909_070 Hb_001416_070--Hb_032050_040 Hb_000120_920 Hb_000120_920 Hb_001416_070--Hb_000120_920 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_004545_090--Hb_003010_020 Hb_000990_090 Hb_000990_090 Hb_004545_090--Hb_000990_090 Hb_000023_190 Hb_000023_190 Hb_004545_090--Hb_000023_190 Hb_002909_090 Hb_002909_090 Hb_004545_090--Hb_002909_090 Hb_000261_100 Hb_000261_100 Hb_000780_190--Hb_000261_100 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_000780_190--Hb_041828_010 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000004_030 Hb_000004_030 Hb_000780_190--Hb_000004_030 Hb_004701_050 Hb_004701_050 Hb_000780_190--Hb_004701_050 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_041828_010--Hb_000004_030 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17227 3.91584 2.7034 4.53066 4.17595 9.9676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23788 2.30239 1.47274 4.37009 6.09846

CAGE analysis