Hb_000261_100

Information

Type -
Description -
Location Contig261: 57747-73666
Sequence    

Annotation

kegg
ID rcu:RCOM_1018060
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012071104.1
description PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
swissprot
ID Q9SCV3
description Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1
trembl
ID A0A067KWJ4
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_01100 PE=3 SV=1
Gene Ontology
ID GO:0005774
description beta-galactosidase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27241: 57977-73636 , PASA_asmbl_27242: 67429-67644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_100 0.0 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
2 Hb_000780_190 0.0695562099 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
3 Hb_000284_230 0.0808710486 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
4 Hb_000035_410 0.0819977642 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
5 Hb_004701_050 0.082686518 - - alpha1 family protein [Populus trichocarpa]
6 Hb_000183_050 0.0831726221 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
7 Hb_004109_370 0.0834240479 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_000640_100 0.0840508791 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000086_440 0.0850024001 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
10 Hb_002475_040 0.0854244321 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
11 Hb_007635_040 0.087240747 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
12 Hb_000345_360 0.0873289036 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
13 Hb_000252_050 0.0885012737 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
14 Hb_089140_050 0.0885722543 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
15 Hb_003124_160 0.0892754178 - - dynamin, putative [Ricinus communis]
16 Hb_000261_030 0.089406329 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
17 Hb_000664_110 0.0894760807 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
18 Hb_073973_150 0.091252967 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
19 Hb_002044_170 0.0918060035 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
20 Hb_006355_020 0.0918275109 - - PREDICTED: CLIP-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_000261_100 Hb_000261_100 Hb_000780_190 Hb_000780_190 Hb_000261_100--Hb_000780_190 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000035_410 Hb_000035_410 Hb_000261_100--Hb_000035_410 Hb_004701_050 Hb_004701_050 Hb_000261_100--Hb_004701_050 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_041828_010 Hb_041828_010 Hb_000780_190--Hb_041828_010 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000004_030 Hb_000004_030 Hb_000780_190--Hb_000004_030 Hb_000780_190--Hb_004701_050 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_000261_030 Hb_000261_030 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_001235_230 Hb_001235_230 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170 Hb_089140_050 Hb_089140_050 Hb_004701_050--Hb_089140_050 Hb_162275_040 Hb_162275_040 Hb_004701_050--Hb_162275_040 Hb_010272_010 Hb_010272_010 Hb_004701_050--Hb_010272_010 Hb_004701_050--Hb_000035_410 Hb_015978_100 Hb_015978_100 Hb_000183_050--Hb_015978_100 Hb_000086_690 Hb_000086_690 Hb_000183_050--Hb_000086_690 Hb_011202_020 Hb_011202_020 Hb_000183_050--Hb_011202_020 Hb_003417_010 Hb_003417_010 Hb_000183_050--Hb_003417_010 Hb_000183_050--Hb_001235_230 Hb_000183_050--Hb_000035_410 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6675 12.4091 8.16802 14.8149 15.245 13.9576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05035 3.13394 4.59462 12.4521 15.1347

CAGE analysis