Hb_041828_010

Information

Type -
Description -
Location Contig41828: 11456-26194
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14050g
description POPTRDRAFT_572859; glycosyl hydrolase family 38 family protein
nr
ID XP_012067350.1
description PREDICTED: alpha-mannosidase [Jatropha curcas]
swissprot
ID C0HJB3
description Alpha-mannosidase OS=Canavalia ensiformis PE=1 SV=1
trembl
ID A0A067LBI4
description Alpha-mannosidase OS=Jatropha curcas GN=JCGZ_26873 PE=3 SV=1
Gene Ontology
ID GO:0005774
description glycosyl hydrolase family 38 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41379: 14930-29792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041828_010 0.0 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
2 Hb_008484_010 0.0435141742 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
3 Hb_000004_030 0.0706676473 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
4 Hb_000780_190 0.0780207294 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
5 Hb_000345_360 0.0803296017 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
6 Hb_000347_560 0.085901945 - - -
7 Hb_004223_290 0.0885849153 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
8 Hb_000284_120 0.0903850061 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
9 Hb_000960_040 0.0933386719 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
10 Hb_000990_090 0.0939273309 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_000261_100 0.0948221863 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
12 Hb_000183_050 0.1005372884 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
13 Hb_000264_350 0.1008026578 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
14 Hb_004875_030 0.1018014004 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
15 Hb_002400_330 0.1021380927 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
16 Hb_000362_150 0.1045172551 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
17 Hb_007456_040 0.1057785396 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
18 Hb_001862_140 0.1058720973 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
19 Hb_000062_020 0.1058820118 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_011918_040 0.106045694 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_041828_010 Hb_041828_010 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_000004_030 Hb_000004_030 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_008484_010--Hb_000347_560 Hb_008484_010--Hb_000004_030 Hb_002400_330 Hb_002400_330 Hb_008484_010--Hb_002400_330 Hb_008484_010--Hb_000345_360 Hb_000284_120 Hb_000284_120 Hb_008484_010--Hb_000284_120 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_000261_100 Hb_000261_100 Hb_000780_190--Hb_000261_100 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000780_190--Hb_000004_030 Hb_004701_050 Hb_004701_050 Hb_000780_190--Hb_004701_050 Hb_004875_030 Hb_004875_030 Hb_000345_360--Hb_004875_030 Hb_000990_090 Hb_000990_090 Hb_000345_360--Hb_000990_090 Hb_000345_360--Hb_004223_290 Hb_009529_030 Hb_009529_030 Hb_000345_360--Hb_009529_030 Hb_000345_360--Hb_002391_290 Hb_162275_040 Hb_162275_040 Hb_000347_560--Hb_162275_040 Hb_000347_560--Hb_004701_050 Hb_002631_140 Hb_002631_140 Hb_000347_560--Hb_002631_140 Hb_000069_570 Hb_000069_570 Hb_000347_560--Hb_000069_570 Hb_004223_290--Hb_004875_030 Hb_000035_410 Hb_000035_410 Hb_004223_290--Hb_000035_410 Hb_002044_050 Hb_002044_050 Hb_004223_290--Hb_002044_050 Hb_000785_040 Hb_000785_040 Hb_004223_290--Hb_000785_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59538 6.3332 4.84856 10.308 9.67553 14.6748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53585 2.34831 3.63856 8.7883 11.6635

CAGE analysis