Hb_002400_330

Information

Type -
Description -
Location Contig2400: 248562-253218
Sequence    

Annotation

kegg
ID rcu:RCOM_0923260
description hypothetical protein
nr
ID XP_012068149.1
description PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
swissprot
ID Q8VY97
description ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1
trembl
ID A0A067LNU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08517 PE=4 SV=1
Gene Ontology
ID GO:0004467
description er membrane protein complex subunit 7 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25180: 249158-253253 , PASA_asmbl_25182: 251116-251270
cDNA
(Sanger)
(ID:Location)		 047_G01.ab1: 249164-253055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_330 0.0 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
2 Hb_008484_010 0.0914160011 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
3 Hb_002611_020 0.1014616403 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
4 Hb_041828_010 0.1021380927 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_050912_010 0.1053868602 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
6 Hb_149225_010 0.1069511627 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
7 Hb_004659_020 0.1092066447 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
8 Hb_181328_010 0.1094234032 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_007026_040 0.113246369 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
10 Hb_000004_030 0.1157550752 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
11 Hb_012194_050 0.1177761493 - - Aspartyl aminopeptidase, putative [Ricinus communis]
12 Hb_000718_080 0.1223351305 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
13 Hb_006810_030 0.1235141346 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_000056_130 0.1271904607 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
15 Hb_000345_360 0.1276268828 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
16 Hb_000784_070 0.1303156091 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
17 Hb_001191_110 0.1304075838 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
18 Hb_001948_130 0.1320892622 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
19 Hb_000990_090 0.1321715686 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
20 Hb_000208_260 0.1322359562 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_330 Hb_002400_330 Hb_008484_010 Hb_008484_010 Hb_002400_330--Hb_008484_010 Hb_002611_020 Hb_002611_020 Hb_002400_330--Hb_002611_020 Hb_041828_010 Hb_041828_010 Hb_002400_330--Hb_041828_010 Hb_050912_010 Hb_050912_010 Hb_002400_330--Hb_050912_010 Hb_149225_010 Hb_149225_010 Hb_002400_330--Hb_149225_010 Hb_004659_020 Hb_004659_020 Hb_002400_330--Hb_004659_020 Hb_008484_010--Hb_041828_010 Hb_000347_560 Hb_000347_560 Hb_008484_010--Hb_000347_560 Hb_000004_030 Hb_000004_030 Hb_008484_010--Hb_000004_030 Hb_000345_360 Hb_000345_360 Hb_008484_010--Hb_000345_360 Hb_000284_120 Hb_000284_120 Hb_008484_010--Hb_000284_120 Hb_000230_180 Hb_000230_180 Hb_002611_020--Hb_000230_180 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002122_010 Hb_002122_010 Hb_002611_020--Hb_002122_010 Hb_005170_010 Hb_005170_010 Hb_002611_020--Hb_005170_010 Hb_000696_010 Hb_000696_010 Hb_002611_020--Hb_000696_010 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_041828_010--Hb_000345_360 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_006541_040 Hb_006541_040 Hb_050912_010--Hb_006541_040 Hb_134429_010 Hb_134429_010 Hb_050912_010--Hb_134429_010 Hb_005015_060 Hb_005015_060 Hb_050912_010--Hb_005015_060 Hb_161994_030 Hb_161994_030 Hb_050912_010--Hb_161994_030 Hb_000056_130 Hb_000056_130 Hb_050912_010--Hb_000056_130 Hb_012194_050 Hb_012194_050 Hb_149225_010--Hb_012194_050 Hb_000718_080 Hb_000718_080 Hb_149225_010--Hb_000718_080 Hb_002600_140 Hb_002600_140 Hb_149225_010--Hb_002600_140 Hb_149225_010--Hb_041828_010 Hb_007026_040 Hb_007026_040 Hb_149225_010--Hb_007026_040 Hb_004659_020--Hb_000004_030 Hb_009529_030 Hb_009529_030 Hb_004659_020--Hb_009529_030 Hb_017295_010 Hb_017295_010 Hb_004659_020--Hb_017295_010 Hb_002785_050 Hb_002785_050 Hb_004659_020--Hb_002785_050 Hb_002248_110 Hb_002248_110 Hb_004659_020--Hb_002248_110 Hb_002273_120 Hb_002273_120 Hb_004659_020--Hb_002273_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8497 11.5694 18.6939 45.9052 26.6934 61.0223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8428 10.6996 12.7826 27.4808 32.7792

CAGE analysis