Hb_050912_010

Information

Type -
Description -
Location Contig50912: 19-475
Sequence    

Annotation

kegg
ID pop:POPTR_0013s025002
description hypothetical protein
nr
ID XP_012089084.1
description PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FR37
description Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1
trembl
ID U5FRE0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s025002g PE=4 SV=1
Gene Ontology
ID GO:0004040
description amidase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46221: 105-472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050912_010 0.0 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
2 Hb_006541_040 0.0952147668 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
3 Hb_134429_010 0.0997572621 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002400_330 0.1053868602 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
5 Hb_005015_060 0.1152658002 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
6 Hb_161994_030 0.1162813425 - - unnamed protein product [Vitis vinifera]
7 Hb_000056_130 0.1217900353 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
8 Hb_008484_010 0.1224601598 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
9 Hb_181441_010 0.1227439208 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
10 Hb_000617_010 0.1230644255 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
11 Hb_000787_160 0.1246360689 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
12 Hb_007253_020 0.1258825226 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
13 Hb_008014_040 0.1283359843 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
14 Hb_002611_020 0.1285720298 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
15 Hb_028227_010 0.1289669102 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
16 Hb_002871_140 0.1298432935 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
17 Hb_001856_180 0.1306973959 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
18 Hb_010150_020 0.1307514672 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
19 Hb_000071_150 0.1309431908 - - Stearoy-ACP desaturase [Ricinus communis]
20 Hb_006810_030 0.1324848794 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_050912_010 Hb_050912_010 Hb_006541_040 Hb_006541_040 Hb_050912_010--Hb_006541_040 Hb_134429_010 Hb_134429_010 Hb_050912_010--Hb_134429_010 Hb_002400_330 Hb_002400_330 Hb_050912_010--Hb_002400_330 Hb_005015_060 Hb_005015_060 Hb_050912_010--Hb_005015_060 Hb_161994_030 Hb_161994_030 Hb_050912_010--Hb_161994_030 Hb_000056_130 Hb_000056_130 Hb_050912_010--Hb_000056_130 Hb_001014_110 Hb_001014_110 Hb_006541_040--Hb_001014_110 Hb_054745_010 Hb_054745_010 Hb_006541_040--Hb_054745_010 Hb_004157_100 Hb_004157_100 Hb_006541_040--Hb_004157_100 Hb_000676_080 Hb_000676_080 Hb_006541_040--Hb_000676_080 Hb_006541_040--Hb_005015_060 Hb_002871_140 Hb_002871_140 Hb_134429_010--Hb_002871_140 Hb_000071_150 Hb_000071_150 Hb_134429_010--Hb_000071_150 Hb_051257_010 Hb_051257_010 Hb_134429_010--Hb_051257_010 Hb_000664_020 Hb_000664_020 Hb_134429_010--Hb_000664_020 Hb_005064_010 Hb_005064_010 Hb_134429_010--Hb_005064_010 Hb_008484_010 Hb_008484_010 Hb_002400_330--Hb_008484_010 Hb_002611_020 Hb_002611_020 Hb_002400_330--Hb_002611_020 Hb_041828_010 Hb_041828_010 Hb_002400_330--Hb_041828_010 Hb_149225_010 Hb_149225_010 Hb_002400_330--Hb_149225_010 Hb_004659_020 Hb_004659_020 Hb_002400_330--Hb_004659_020 Hb_000787_160 Hb_000787_160 Hb_005015_060--Hb_000787_160 Hb_002883_030 Hb_002883_030 Hb_005015_060--Hb_002883_030 Hb_015099_030 Hb_015099_030 Hb_005015_060--Hb_015099_030 Hb_001662_100 Hb_001662_100 Hb_005015_060--Hb_001662_100 Hb_001856_180 Hb_001856_180 Hb_005015_060--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_005015_060--Hb_000345_160 Hb_000640_070 Hb_000640_070 Hb_161994_030--Hb_000640_070 Hb_000252_050 Hb_000252_050 Hb_161994_030--Hb_000252_050 Hb_008397_010 Hb_008397_010 Hb_161994_030--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_161994_030--Hb_002784_030 Hb_000120_550 Hb_000120_550 Hb_161994_030--Hb_000120_550 Hb_001194_020 Hb_001194_020 Hb_161994_030--Hb_001194_020 Hb_002226_080 Hb_002226_080 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_009569_040 Hb_009569_040 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.1433 72.3267 123.738 181.32 59.3963 221.319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.9384 48.5265 44.4968 109.237 129.502

CAGE analysis