Hb_001014_110

Information

Type -
Description -
Location Contig1014: 104570-108788
Sequence    

Annotation

kegg
ID pmum:103322141
description ubiquitin thioesterase otubain-like
nr
ID XP_012088717.1
description PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
swissprot
ID Q8LG98
description Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2
trembl
ID A0A067JKE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23096 PE=4 SV=1
Gene Ontology
ID GO:0044237
description ubiquitin thioesterase otubain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00707: 106558-107205 , PASA_asmbl_00708: 106031-108020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_110 0.0 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
2 Hb_005527_020 0.0939952368 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
3 Hb_004157_100 0.0977665599 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_000004_020 0.1034689278 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000676_080 0.1057751502 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
6 Hb_054745_010 0.1068322193 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006541_040 0.1095481903 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
8 Hb_000022_020 0.1103383793 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
9 Hb_012340_070 0.1111361738 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
10 Hb_000302_310 0.1181020009 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
11 Hb_099878_030 0.1206078569 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
12 Hb_005015_060 0.1213574223 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
13 Hb_162603_010 0.1222339491 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_005701_060 0.1239644216 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
15 Hb_002205_210 0.1244042109 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
16 Hb_001119_060 0.1262603521 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
17 Hb_143629_130 0.1270427255 - - unnamed protein product [Coffea canephora]
18 Hb_001191_110 0.1273795151 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
19 Hb_003010_020 0.1273866723 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_004117_160 0.1298517813 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_001014_110 Hb_001014_110 Hb_005527_020 Hb_005527_020 Hb_001014_110--Hb_005527_020 Hb_004157_100 Hb_004157_100 Hb_001014_110--Hb_004157_100 Hb_000004_020 Hb_000004_020 Hb_001014_110--Hb_000004_020 Hb_000676_080 Hb_000676_080 Hb_001014_110--Hb_000676_080 Hb_054745_010 Hb_054745_010 Hb_001014_110--Hb_054745_010 Hb_006541_040 Hb_006541_040 Hb_001014_110--Hb_006541_040 Hb_005527_020--Hb_000676_080 Hb_005527_020--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_005527_020--Hb_001250_060 Hb_005527_020--Hb_000004_020 Hb_005527_020--Hb_054745_010 Hb_000107_230 Hb_000107_230 Hb_004157_100--Hb_000107_230 Hb_004157_100--Hb_054745_010 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_004157_100--Hb_000676_080 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_000676_080--Hb_054745_010 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_000594_050 Hb_000594_050 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210 Hb_050912_010 Hb_050912_010 Hb_006541_040--Hb_050912_010 Hb_006541_040--Hb_054745_010 Hb_006541_040--Hb_004157_100 Hb_006541_040--Hb_000676_080 Hb_005015_060 Hb_005015_060 Hb_006541_040--Hb_005015_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54537 1.597 2.89881 5.86823 2.87331 6.61861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6383 2.96275 0.895631 4.64146 3.72647

CAGE analysis