Hb_005015_060

Information

Type -
Description -
Location Contig5015: 35905-43803
Sequence    

Annotation

kegg
ID mus:103968627
description developmentally-regulated G-protein 3
nr
ID XP_012075233.1
description PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
swissprot
ID Q9SVA6
description Developmentally-regulated G-protein 3 OS=Arabidopsis thaliana GN=DRG3 PE=1 SV=1
trembl
ID A0A067KGN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09406 PE=4 SV=1
Gene Ontology
ID GO:0005829
description developmentally-regulated g-protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45858: 36140-37004 , PASA_asmbl_45859: 40488-43282 , PASA_asmbl_45860: 40488-43763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_060 0.0 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
2 Hb_000787_160 0.0668859681 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
3 Hb_002883_030 0.0732821203 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
4 Hb_015099_030 0.0841036925 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
5 Hb_001662_100 0.0857961484 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
6 Hb_001856_180 0.0863055331 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
7 Hb_000345_160 0.0865812805 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_000049_020 0.0880539503 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
9 Hb_004102_170 0.0884279155 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
10 Hb_000022_020 0.0884508688 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
11 Hb_000300_270 0.0898362032 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_004452_110 0.0905275203 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
13 Hb_004157_100 0.0921798515 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
14 Hb_002400_320 0.0939450033 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000212_120 0.0959074422 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
16 Hb_008406_180 0.0971373638 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
17 Hb_003878_150 0.097311696 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
18 Hb_000056_130 0.097465783 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
19 Hb_001405_210 0.0989171323 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_000617_010 0.0996446061 - - hypothetical protein JCGZ_23296 [Jatropha curcas]

Gene co-expression network

sample Hb_005015_060 Hb_005015_060 Hb_000787_160 Hb_000787_160 Hb_005015_060--Hb_000787_160 Hb_002883_030 Hb_002883_030 Hb_005015_060--Hb_002883_030 Hb_015099_030 Hb_015099_030 Hb_005015_060--Hb_015099_030 Hb_001662_100 Hb_001662_100 Hb_005015_060--Hb_001662_100 Hb_001856_180 Hb_001856_180 Hb_005015_060--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_005015_060--Hb_000345_160 Hb_004102_170 Hb_004102_170 Hb_000787_160--Hb_004102_170 Hb_000787_160--Hb_000345_160 Hb_000322_080 Hb_000322_080 Hb_000787_160--Hb_000322_080 Hb_004705_170 Hb_004705_170 Hb_000787_160--Hb_004705_170 Hb_000787_160--Hb_001662_100 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_002883_030--Hb_001662_100 Hb_000049_020 Hb_000049_020 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_015099_030--Hb_002883_030 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_001856_180--Hb_000345_160 Hb_007248_030 Hb_007248_030 Hb_001856_180--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_001856_180--Hb_007062_040 Hb_001405_210 Hb_001405_210 Hb_001856_180--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_001856_180--Hb_000702_090 Hb_001377_310 Hb_001377_310 Hb_001856_180--Hb_001377_310 Hb_000345_160--Hb_004037_020 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52396 2.32634 3.44922 5.61998 1.83276 3.85243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42392 2.19116 1.11188 3.00635 4.10068

CAGE analysis