Hb_004957_030

Information

Type -
Description -
Location Contig4957: 20763-21170
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12810g
description POPTRDRAFT_820662; hydroxyproline-rich glycoprotein
nr
ID XP_002311500.2
description hydroxyproline-rich glycoprotein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJA6
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s12810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004957_030 0.0 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
2 Hb_001080_300 0.0660708689 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
3 Hb_015099_030 0.0713707716 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
4 Hb_001141_240 0.0782737236 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
5 Hb_007545_010 0.0798686086 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
6 Hb_006970_020 0.0801652437 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
7 Hb_001627_040 0.0815775207 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
8 Hb_000270_480 0.0821362309 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
9 Hb_002006_150 0.0852132785 - - copine, putative [Ricinus communis]
10 Hb_006210_010 0.0863505355 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
11 Hb_055690_010 0.0869820453 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
12 Hb_000417_390 0.0882489475 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
13 Hb_011224_050 0.0902627361 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
14 Hb_000803_320 0.0906466795 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
15 Hb_025194_050 0.09170145 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
16 Hb_000169_020 0.0938443278 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
17 Hb_028487_070 0.0949934752 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001975_150 0.095531574 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
19 Hb_030736_040 0.0955896597 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
20 Hb_106890_010 0.0962051682 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004957_030 Hb_004957_030 Hb_001080_300 Hb_001080_300 Hb_004957_030--Hb_001080_300 Hb_015099_030 Hb_015099_030 Hb_004957_030--Hb_015099_030 Hb_001141_240 Hb_001141_240 Hb_004957_030--Hb_001141_240 Hb_007545_010 Hb_007545_010 Hb_004957_030--Hb_007545_010 Hb_006970_020 Hb_006970_020 Hb_004957_030--Hb_006970_020 Hb_001627_040 Hb_001627_040 Hb_004957_030--Hb_001627_040 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001975_150 Hb_001975_150 Hb_001080_300--Hb_001975_150 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_001141_240--Hb_006970_020 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_007545_010--Hb_000139_080 Hb_006970_020--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_000078_140 Hb_000078_140 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020 Hb_001627_040--Hb_001029_040 Hb_001627_040--Hb_007545_010 Hb_000803_320 Hb_000803_320 Hb_001627_040--Hb_000803_320 Hb_001627_040--Hb_000417_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.70712 14.2347 18.0011 25.0992 5.60516 12.3707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5139 8.89299 9.22272 18.467 32.0001

CAGE analysis