Hb_000417_390

Information

Type -
Description -
Location Contig417: 331349-334852
Sequence    

Annotation

kegg
ID tcc:TCM_029638
description ER lumen protein retaining receptor family protein
nr
ID XP_012091828.1
description PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
swissprot
ID P35402
description ER lumen protein-retaining receptor A OS=Arabidopsis thaliana GN=ERD2A PE=2 SV=1
trembl
ID A0A067JNR2
description ER lumen protein-retaining receptor OS=Jatropha curcas GN=JCGZ_21610 PE=3 SV=1
Gene Ontology
ID GO:0005789
description er lumen protein-retaining receptor a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41285: 331378-334979 , PASA_asmbl_41286: 332382-332663
cDNA
(Sanger)
(ID:Location)		 012_J21.ab1: 331748-334979 , 034_O16.ab1: 331733-334935

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_390 0.0 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
2 Hb_000390_050 0.0716317938 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
3 Hb_000585_110 0.0759133746 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
4 Hb_001080_300 0.0775823452 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
5 Hb_001029_040 0.080434054 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
6 Hb_015884_020 0.0832529596 - - PREDICTED: protein PIR [Jatropha curcas]
7 Hb_074197_040 0.0860862735 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
8 Hb_006970_020 0.086220364 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
9 Hb_055690_010 0.0881124671 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
10 Hb_004957_030 0.0882489475 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
11 Hb_000979_130 0.0889430866 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
12 Hb_001627_040 0.0891935199 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
13 Hb_005694_060 0.0896652301 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
14 Hb_007545_010 0.091999646 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
15 Hb_000638_070 0.0944529758 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
16 Hb_000920_310 0.0960709334 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_000665_180 0.0967818083 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
18 Hb_002928_090 0.0981584561 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
19 Hb_000665_170 0.0986192918 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
20 Hb_019654_020 0.0998761732 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_000417_390 Hb_000417_390 Hb_000390_050 Hb_000390_050 Hb_000417_390--Hb_000390_050 Hb_000585_110 Hb_000585_110 Hb_000417_390--Hb_000585_110 Hb_001080_300 Hb_001080_300 Hb_000417_390--Hb_001080_300 Hb_001029_040 Hb_001029_040 Hb_000417_390--Hb_001029_040 Hb_015884_020 Hb_015884_020 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040 Hb_007765_040 Hb_007765_040 Hb_000390_050--Hb_007765_040 Hb_003097_140 Hb_003097_140 Hb_000390_050--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_000390_050--Hb_007416_210 Hb_002928_090 Hb_002928_090 Hb_000390_050--Hb_002928_090 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_055690_010 Hb_055690_010 Hb_000585_110--Hb_055690_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_001080_300--Hb_001029_040 Hb_001975_150 Hb_001975_150 Hb_001080_300--Hb_001975_150 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_000078_140 Hb_000078_140 Hb_074197_040--Hb_000078_140 Hb_000815_300 Hb_000815_300 Hb_074197_040--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_074197_040--Hb_011377_040 Hb_001301_270 Hb_001301_270 Hb_074197_040--Hb_001301_270 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_074197_040--Hb_006970_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.48564 9.11974 14.9587 27.4702 5.84986 9.77116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71351 7.99338 9.41497 13.0296 26.2486

CAGE analysis