Hb_001029_040

Information

Type -
Description -
Location Contig1029: 173824-174789
Sequence    

Annotation

kegg
ID rcu:RCOM_0893440
description hypothetical protein
nr
ID XP_012080898.1
description PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K332
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15251 PE=4 SV=1
Gene Ontology
ID GO:0016021
description polyadenylate-binding protein 1-b-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01151: 173712-179063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001029_040 0.0 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
2 Hb_001627_040 0.062554175 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
3 Hb_007545_010 0.0722108375 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
4 Hb_003746_010 0.0731207745 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001157_230 0.0781337249 - - Protein AFR, putative [Ricinus communis]
6 Hb_138585_080 0.0788356119 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
7 Hb_022250_010 0.0793681435 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
8 Hb_000417_390 0.080434054 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
9 Hb_001080_300 0.0817511039 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
10 Hb_005192_010 0.0832305443 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
11 Hb_001876_040 0.0840755586 - - PREDICTED: mucin-5B [Jatropha curcas]
12 Hb_009296_080 0.0854428631 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
13 Hb_009252_030 0.087916884 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
14 Hb_000390_050 0.0903803069 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
15 Hb_001329_250 0.0919851091 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
16 Hb_002289_060 0.0920815463 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001946_180 0.0933389846 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000803_320 0.0935026325 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
19 Hb_001301_270 0.0936273576 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
20 Hb_001754_020 0.0937148232 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001029_040 Hb_001029_040 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_001080_300 Hb_001080_300 Hb_001627_040--Hb_001080_300 Hb_004957_030 Hb_004957_030 Hb_001627_040--Hb_004957_030 Hb_001627_040--Hb_007545_010 Hb_000803_320 Hb_000803_320 Hb_001627_040--Hb_000803_320 Hb_000417_390 Hb_000417_390 Hb_001627_040--Hb_000417_390 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_009296_080 Hb_009296_080 Hb_138585_080--Hb_009296_080 Hb_000504_180 Hb_000504_180 Hb_138585_080--Hb_000504_180 Hb_001946_180 Hb_001946_180 Hb_138585_080--Hb_001946_180 Hb_002874_110 Hb_002874_110 Hb_138585_080--Hb_002874_110 Hb_000465_280 Hb_000465_280 Hb_138585_080--Hb_000465_280 Hb_022250_010--Hb_001876_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9063 55.8909 52.2229 113.967 32.6002 37.5874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7502 29.5069 42.1097 42.1952 111.504

CAGE analysis