Hb_005192_010

Information

Type -
Description -
Location Contig5192: 51053-53458
Sequence    

Annotation

kegg
ID rcu:RCOM_1274640
description ubiquitin-protein ligase, putative
nr
ID XP_012078076.1
description PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067KD10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13689 PE=4 SV=1
Gene Ontology
ID GO:0005515
description u-box domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46647: 51255-53466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005192_010 0.0 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
2 Hb_003975_010 0.0799267623 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
3 Hb_001029_040 0.0832305443 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
4 Hb_003746_010 0.0836497841 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000300_510 0.085942476 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
6 Hb_000922_060 0.0859832059 - - kinesin light chain, putative [Ricinus communis]
7 Hb_001754_020 0.0922821884 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
8 Hb_003682_070 0.0981749054 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
9 Hb_001882_020 0.0984819548 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
10 Hb_183086_030 0.0997137917 - - GTPase-activating protein GYP7 [Gossypium arboreum]
11 Hb_009252_030 0.1010069328 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
12 Hb_000413_020 0.1032513134 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
13 Hb_000000_310 0.1040572492 - - metalloendopeptidase, putative [Ricinus communis]
14 Hb_000193_300 0.1092720772 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
15 Hb_001691_040 0.1093899307 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
16 Hb_000140_340 0.1098498705 - - PREDICTED: protein ABIL1 [Jatropha curcas]
17 Hb_001627_040 0.1102860724 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
18 Hb_005977_100 0.1115343891 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
19 Hb_000665_190 0.1121930566 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007897_030 0.1132900479 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]

Gene co-expression network

sample Hb_005192_010 Hb_005192_010 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_001691_040 Hb_001691_040 Hb_003975_010--Hb_001691_040 Hb_003975_010--Hb_001754_020 Hb_000912_100 Hb_000912_100 Hb_003975_010--Hb_000912_100 Hb_002046_060 Hb_002046_060 Hb_003975_010--Hb_002046_060 Hb_009252_030 Hb_009252_030 Hb_003975_010--Hb_009252_030 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_003746_010--Hb_009252_030 Hb_000000_310 Hb_000000_310 Hb_000300_510--Hb_000000_310 Hb_000300_510--Hb_000922_060 Hb_000300_510--Hb_003682_070 Hb_001421_090 Hb_001421_090 Hb_000300_510--Hb_001421_090 Hb_000684_390 Hb_000684_390 Hb_000300_510--Hb_000684_390 Hb_000922_060--Hb_003682_070 Hb_000922_060--Hb_000000_310 Hb_183086_030 Hb_183086_030 Hb_000922_060--Hb_183086_030 Hb_000922_060--Hb_022250_010 Hb_021576_070 Hb_021576_070 Hb_001754_020--Hb_021576_070 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9655 24.1675 18.3221 49.3111 9.20841 12.1169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83471 9.89302 10.6254 10.3303 38.4055

CAGE analysis