Hb_002046_060

Information

Type -
Description -
Location Contig2046: 63681-64772
Sequence    

Annotation

kegg
ID rcu:RCOM_1074580
description acetylglucosaminyltransferase, putative
nr
ID XP_012081209.1
description PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
swissprot
ID Q02527
description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2
trembl
ID A0A067KEK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17041 PE=4 SV=1
Gene Ontology
ID GO:0016020
description beta- -mannosyl-glycoprotein 4-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21072: 64620-67622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_060 0.0 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
2 Hb_001699_170 0.0852856359 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002349_030 0.0952485961 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000912_100 0.0960390254 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
5 Hb_006469_070 0.0962762329 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
6 Hb_003975_010 0.0985807268 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
7 Hb_000012_240 0.0985974464 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
8 Hb_001474_020 0.1017110118 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
9 Hb_023344_110 0.1020668743 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
10 Hb_004030_060 0.1056305069 - - receptor protein kinase zmpk1, putative [Ricinus communis]
11 Hb_000711_010 0.1087313621 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
12 Hb_116349_120 0.1093826679 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000570_020 0.1097118812 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
14 Hb_003581_130 0.1098290639 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_004109_050 0.1103021855 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
16 Hb_000666_010 0.1105308337 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002217_090 0.1108292834 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
18 Hb_001956_060 0.1126672835 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
19 Hb_001754_020 0.11364507 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
20 Hb_031089_050 0.1165192771 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002046_060 Hb_002046_060 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_006469_070 Hb_006469_070 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_000416_060 Hb_000416_060 Hb_001699_170--Hb_000416_060 Hb_031089_050 Hb_031089_050 Hb_001699_170--Hb_031089_050 Hb_005588_120 Hb_005588_120 Hb_001699_170--Hb_005588_120 Hb_003581_130 Hb_003581_130 Hb_001699_170--Hb_003581_130 Hb_004030_060 Hb_004030_060 Hb_001699_170--Hb_004030_060 Hb_000711_010 Hb_000711_010 Hb_002349_030--Hb_000711_010 Hb_060094_010 Hb_060094_010 Hb_002349_030--Hb_060094_010 Hb_001729_020 Hb_001729_020 Hb_002349_030--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_002349_030--Hb_000197_180 Hb_002349_030--Hb_000012_240 Hb_001691_040 Hb_001691_040 Hb_000912_100--Hb_001691_040 Hb_002217_090 Hb_002217_090 Hb_000912_100--Hb_002217_090 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_000912_100--Hb_003975_010 Hb_002876_210 Hb_002876_210 Hb_000912_100--Hb_002876_210 Hb_019280_020 Hb_019280_020 Hb_006469_070--Hb_019280_020 Hb_000265_140 Hb_000265_140 Hb_006469_070--Hb_000265_140 Hb_004109_050 Hb_004109_050 Hb_006469_070--Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_006469_070--Hb_021576_070 Hb_001754_020 Hb_001754_020 Hb_006469_070--Hb_001754_020 Hb_003975_010--Hb_001691_040 Hb_005192_010 Hb_005192_010 Hb_003975_010--Hb_005192_010 Hb_003975_010--Hb_001754_020 Hb_009252_030 Hb_009252_030 Hb_003975_010--Hb_009252_030 Hb_000012_240--Hb_000711_010 Hb_000666_010 Hb_000666_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83798 10.7642 6.97732 16.0194 1.40179 2.17664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00105 3.25435 4.23584 6.45877 9.71476

CAGE analysis