Hb_001956_060

Information

Type -
Description -
Location Contig1956: 29792-42269
Sequence    

Annotation

kegg
ID pxb:103964669
description oxysterol-binding protein-related protein 3C-like
nr
ID XP_012067017.1
description PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
swissprot
ID Q93Y40
description Oxysterol-binding protein-related protein 3C OS=Arabidopsis thaliana GN=ORP3C PE=2 SV=1
trembl
ID A0A067L4Y1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02983 PE=3 SV=1
Gene Ontology
ID GO:0005829
description oxysterol-binding protein 3c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19577: 29947-34668 , PASA_asmbl_19578: 29947-41761 , PASA_asmbl_19579: 38461-42207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_060 0.0 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
2 Hb_000666_010 0.0776488635 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000012_240 0.0896103614 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
4 Hb_000711_010 0.0903969883 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
5 Hb_128589_010 0.0941603003 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
6 Hb_003581_130 0.1008453769 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_000110_300 0.1009448621 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
8 Hb_002686_140 0.1010323092 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_002349_030 0.1023891217 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000205_250 0.1040792453 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
11 Hb_000015_200 0.1044042796 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
12 Hb_009372_020 0.1056022633 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
13 Hb_002235_310 0.1082014232 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
14 Hb_000015_090 0.1126198076 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
15 Hb_002046_060 0.1126672835 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
16 Hb_002276_040 0.1137141772 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
17 Hb_006816_480 0.1150195143 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
18 Hb_004884_090 0.1154555399 - - importin beta-1, putative [Ricinus communis]
19 Hb_000452_030 0.1157372465 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
20 Hb_000656_390 0.1159443729 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001956_060 Hb_001956_060 Hb_000666_010 Hb_000666_010 Hb_001956_060--Hb_000666_010 Hb_000012_240 Hb_000012_240 Hb_001956_060--Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_000110_300 Hb_000110_300 Hb_001956_060--Hb_000110_300 Hb_000535_050 Hb_000535_050 Hb_000666_010--Hb_000535_050 Hb_007904_300 Hb_007904_300 Hb_000666_010--Hb_007904_300 Hb_000510_170 Hb_000510_170 Hb_000666_010--Hb_000510_170 Hb_001811_170 Hb_001811_170 Hb_000666_010--Hb_001811_170 Hb_000666_010--Hb_000012_240 Hb_000012_240--Hb_000711_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_000711_010--Hb_002349_030 Hb_002965_050 Hb_002965_050 Hb_000711_010--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_000711_010--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_000711_010--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_000711_010--Hb_060094_010 Hb_128589_010--Hb_000110_300 Hb_000205_250 Hb_000205_250 Hb_128589_010--Hb_000205_250 Hb_009646_010 Hb_009646_010 Hb_128589_010--Hb_009646_010 Hb_000345_320 Hb_000345_320 Hb_128589_010--Hb_000345_320 Hb_000625_090 Hb_000625_090 Hb_128589_010--Hb_000625_090 Hb_000015_200 Hb_000015_200 Hb_003581_130--Hb_000015_200 Hb_000452_030 Hb_000452_030 Hb_003581_130--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_003581_130--Hb_000015_090 Hb_000340_220 Hb_000340_220 Hb_003581_130--Hb_000340_220 Hb_003581_130--Hb_002349_030 Hb_000369_080 Hb_000369_080 Hb_003581_130--Hb_000369_080 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_000110_300--Hb_000012_240 Hb_000110_300--Hb_009646_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60964 26.6398 17.9677 22.1786 3.25786 4.42299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.46194 7.41648 12.414 19.7968 18.2069

CAGE analysis