Hb_128589_010

Information

Type -
Description -
Location Contig128589: 2210-2740
Sequence    

Annotation

kegg
ID tcc:TCM_020342
description Cyclin dependent kinase inhibitor, putative
nr
ID XP_012071158.1
description PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
swissprot
ID Q9FKB5
description Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1
trembl
ID A0A067L5J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01136 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase inhibitor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128589_010 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
2 Hb_001956_060 0.0941603003 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
3 Hb_000110_300 0.1044224133 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
4 Hb_000205_250 0.1145742817 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
5 Hb_009646_010 0.1153033428 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
6 Hb_000345_320 0.1170621938 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
7 Hb_000625_090 0.1205152524 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006816_480 0.1241553117 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
9 Hb_000666_010 0.124786604 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000012_240 0.1256784589 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
11 Hb_002349_030 0.1261997593 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000084_220 0.1267421363 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
13 Hb_000699_230 0.1270374119 - - Ankyrin repeat family protein, putative [Theobroma cacao]
14 Hb_000331_510 0.1305229763 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
15 Hb_002235_310 0.1314914562 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
16 Hb_002276_040 0.1324333937 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
17 Hb_001900_100 0.1327215618 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
18 Hb_000139_140 0.133062803 - - Acyl-CoA synthetase [Ricinus communis]
19 Hb_000649_120 0.1354036007 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_002151_100 0.1366622172 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]

Gene co-expression network

sample Hb_128589_010 Hb_128589_010 Hb_001956_060 Hb_001956_060 Hb_128589_010--Hb_001956_060 Hb_000110_300 Hb_000110_300 Hb_128589_010--Hb_000110_300 Hb_000205_250 Hb_000205_250 Hb_128589_010--Hb_000205_250 Hb_009646_010 Hb_009646_010 Hb_128589_010--Hb_009646_010 Hb_000345_320 Hb_000345_320 Hb_128589_010--Hb_000345_320 Hb_000625_090 Hb_000625_090 Hb_128589_010--Hb_000625_090 Hb_000666_010 Hb_000666_010 Hb_001956_060--Hb_000666_010 Hb_000012_240 Hb_000012_240 Hb_001956_060--Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_001956_060--Hb_000711_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_001956_060--Hb_000110_300 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_000110_300--Hb_000012_240 Hb_000110_300--Hb_009646_010 Hb_002235_310 Hb_002235_310 Hb_000205_250--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000205_250--Hb_000866_110 Hb_000271_120 Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_000205_250--Hb_011925_020 Hb_000125_180 Hb_000125_180 Hb_000205_250--Hb_000125_180 Hb_000205_250--Hb_001956_060 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_002276_040 Hb_002276_040 Hb_000345_320--Hb_002276_040 Hb_082741_010 Hb_082741_010 Hb_000345_320--Hb_082741_010 Hb_000209_100 Hb_000209_100 Hb_000345_320--Hb_000209_100 Hb_006916_110 Hb_006916_110 Hb_000345_320--Hb_006916_110 Hb_010872_050 Hb_010872_050 Hb_000345_320--Hb_010872_050 Hb_000144_120 Hb_000144_120 Hb_000345_320--Hb_000144_120 Hb_000625_090--Hb_002915_060 Hb_000997_180 Hb_000997_180 Hb_000625_090--Hb_000997_180 Hb_013057_020 Hb_013057_020 Hb_000625_090--Hb_013057_020 Hb_006006_040 Hb_006006_040 Hb_000625_090--Hb_006006_040 Hb_000227_160 Hb_000227_160 Hb_000625_090--Hb_000227_160 Hb_000625_090--Hb_000110_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43965 37.0403 22.2871 33.4708 2.87035 3.96203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7634 9.56994 15.2551 36.8865 17.7568

CAGE analysis