Hb_010872_050

Information

Type -
Description -
Location Contig10872: 33726-36176
Sequence    

Annotation

kegg
ID osa:9270970
description Os10g0415128
nr
ID KJB40816.1
description hypothetical protein B456_007G078100 [Gossypium raimondii]
swissprot
ID Q8GXT7
description Probable prolyl 4-hydroxylase 12 OS=Arabidopsis thaliana GN=P4H12 PE=2 SV=1
trembl
ID A0A0D2SG08
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G078100 PE=4 SV=1
Gene Ontology
ID GO:0016706
description probable prolyl 4-hydroxylase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02636: 25084-36150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010872_050 0.0 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
2 Hb_016734_020 0.0695738189 - - sugar transporter, putative [Ricinus communis]
3 Hb_007185_040 0.0984194624 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
4 Hb_011674_040 0.0989873922 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
5 Hb_006916_110 0.099247955 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
6 Hb_000979_220 0.100498685 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
7 Hb_000345_320 0.1023623199 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
8 Hb_027760_060 0.1041147188 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_000787_200 0.1043411318 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000465_150 0.1054107307 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
11 Hb_004096_110 0.1060702775 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
12 Hb_003636_080 0.1067307959 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
13 Hb_021576_010 0.1073513421 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
14 Hb_012633_050 0.1077658925 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000229_050 0.108389789 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
16 Hb_000101_390 0.1084277005 - - PREDICTED: mucin-5B [Jatropha curcas]
17 Hb_000009_030 0.1084935515 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
18 Hb_003777_290 0.1093167849 - - polypyrimidine tract binding protein, putative [Ricinus communis]
19 Hb_001504_060 0.1116423144 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
20 Hb_008206_080 0.1153530969 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]

Gene co-expression network

sample Hb_010872_050 Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_010872_050--Hb_016734_020 Hb_007185_040 Hb_007185_040 Hb_010872_050--Hb_007185_040 Hb_011674_040 Hb_011674_040 Hb_010872_050--Hb_011674_040 Hb_006916_110 Hb_006916_110 Hb_010872_050--Hb_006916_110 Hb_000979_220 Hb_000979_220 Hb_010872_050--Hb_000979_220 Hb_000345_320 Hb_000345_320 Hb_010872_050--Hb_000345_320 Hb_008206_080 Hb_008206_080 Hb_016734_020--Hb_008206_080 Hb_004096_110 Hb_004096_110 Hb_016734_020--Hb_004096_110 Hb_002596_060 Hb_002596_060 Hb_016734_020--Hb_002596_060 Hb_016734_020--Hb_000979_220 Hb_027760_060 Hb_027760_060 Hb_016734_020--Hb_027760_060 Hb_172112_020 Hb_172112_020 Hb_007185_040--Hb_172112_020 Hb_001004_140 Hb_001004_140 Hb_007185_040--Hb_001004_140 Hb_007185_040--Hb_002596_060 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_000976_110 Hb_000976_110 Hb_011674_040--Hb_000976_110 Hb_000270_170 Hb_000270_170 Hb_011674_040--Hb_000270_170 Hb_000787_200 Hb_000787_200 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_000318_150 Hb_000318_150 Hb_011674_040--Hb_000318_150 Hb_000960_080 Hb_000960_080 Hb_011674_040--Hb_000960_080 Hb_012325_010 Hb_012325_010 Hb_006916_110--Hb_012325_010 Hb_042474_010 Hb_042474_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000209_100 Hb_000209_100 Hb_006916_110--Hb_000209_100 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_000979_220--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_003777_290 Hb_003777_290 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_002276_040 Hb_002276_040 Hb_000345_320--Hb_002276_040 Hb_082741_010 Hb_082741_010 Hb_000345_320--Hb_082741_010 Hb_000345_320--Hb_000209_100 Hb_000345_320--Hb_006916_110 Hb_000144_120 Hb_000144_120 Hb_000345_320--Hb_000144_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05084 6.1174 10.3563 5.60558 3.01447 2.64479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50463 3.7248 3.84144 12.6526 6.8644

CAGE analysis