Hb_172112_020

Information

Type -
Description -
Location Contig172112: 14164-19631
Sequence    

Annotation

kegg
ID rcu:RCOM_0670030
description fumarylacetoacetate hydrolase, putative (EC:3.7.1.2)
nr
ID XP_012072692.1
description PREDICTED: fumarylacetoacetase [Jatropha curcas]
swissprot
ID A5PKH3
description Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1
trembl
ID A0A067KNU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06461 PE=4 SV=1
Gene Ontology
ID GO:0004334
description low quality protein: fumarylacetoacetase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16217: 14269-19659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172112_020 0.0 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
2 Hb_007185_040 0.0849649509 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
3 Hb_010422_010 0.1112366249 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_000979_220 0.1143609012 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
5 Hb_011282_050 0.1188493832 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
6 Hb_000190_090 0.1188592761 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
7 Hb_001369_300 0.1214028146 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
8 Hb_016734_020 0.1229467336 - - sugar transporter, putative [Ricinus communis]
9 Hb_012022_080 0.1231139816 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_021576_010 0.1240162067 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
11 Hb_002596_060 0.1257046823 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002046_010 0.1263434059 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010872_050 0.1267176666 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
14 Hb_004096_110 0.1276684933 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
15 Hb_001269_650 0.1281401927 - - transporter, putative [Ricinus communis]
16 Hb_009732_020 0.1287979319 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
17 Hb_000510_340 0.1304078236 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
18 Hb_001009_280 0.1328882077 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
19 Hb_004787_080 0.1366229375 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
20 Hb_011224_160 0.136970417 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]

Gene co-expression network

sample Hb_172112_020 Hb_172112_020 Hb_007185_040 Hb_007185_040 Hb_172112_020--Hb_007185_040 Hb_010422_010 Hb_010422_010 Hb_172112_020--Hb_010422_010 Hb_000979_220 Hb_000979_220 Hb_172112_020--Hb_000979_220 Hb_011282_050 Hb_011282_050 Hb_172112_020--Hb_011282_050 Hb_000190_090 Hb_000190_090 Hb_172112_020--Hb_000190_090 Hb_001369_300 Hb_001369_300 Hb_172112_020--Hb_001369_300 Hb_001004_140 Hb_001004_140 Hb_007185_040--Hb_001004_140 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_010872_050 Hb_010872_050 Hb_007185_040--Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_002007_080 Hb_002007_080 Hb_010422_010--Hb_002007_080 Hb_002471_290 Hb_002471_290 Hb_010422_010--Hb_002471_290 Hb_010863_010 Hb_010863_010 Hb_010422_010--Hb_010863_010 Hb_000510_340 Hb_000510_340 Hb_010422_010--Hb_000510_340 Hb_000381_120 Hb_000381_120 Hb_010422_010--Hb_000381_120 Hb_003228_110 Hb_003228_110 Hb_010422_010--Hb_003228_110 Hb_021576_010 Hb_021576_010 Hb_000979_220--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_003777_290 Hb_003777_290 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_004096_110 Hb_004096_110 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_001660_100 Hb_001660_100 Hb_011282_050--Hb_001660_100 Hb_011282_050--Hb_010422_010 Hb_003037_020 Hb_003037_020 Hb_011282_050--Hb_003037_020 Hb_011282_050--Hb_000510_340 Hb_011282_050--Hb_002007_080 Hb_011282_050--Hb_001369_300 Hb_012022_080 Hb_012022_080 Hb_000190_090--Hb_012022_080 Hb_042474_010 Hb_042474_010 Hb_000190_090--Hb_042474_010 Hb_000190_090--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_000190_090--Hb_011224_160 Hb_000190_090--Hb_021576_010 Hb_016347_010 Hb_016347_010 Hb_000190_090--Hb_016347_010 Hb_001369_300--Hb_001660_100 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_005271_040 Hb_005271_040 Hb_001369_300--Hb_005271_040 Hb_000875_080 Hb_000875_080 Hb_001369_300--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5425 30.2634 58.371 32.6076 30.9269 19.5593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3027 29.3103 29.7277 107.91 28.0457

CAGE analysis