Hb_010422_010

Information

Type -
Description -
Location Contig10422: 5990-15907
Sequence    

Annotation

kegg
ID pmum:103334239
description 6-phosphofructokinase 5, chloroplastic
nr
ID AIE47273.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q8VYN6
description ATP-dependent 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1
trembl
ID A0A068LJZ1
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK4 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01545: 9012-9329 , PASA_asmbl_01546: 5990-15466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010422_010 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_002007_080 0.082544645 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
3 Hb_002471_290 0.0904445464 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
4 Hb_010863_010 0.0958982794 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000510_340 0.098079934 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
6 Hb_000381_120 0.0991186467 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
7 Hb_003228_110 0.0997670295 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
8 Hb_001541_290 0.1000031521 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
9 Hb_002456_010 0.1003414645 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
10 Hb_000556_120 0.1004490196 - - Spastin, putative [Ricinus communis]
11 Hb_003647_130 0.1012161288 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
12 Hb_010921_050 0.1013476464 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
13 Hb_002053_150 0.1023977629 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
14 Hb_000853_150 0.1026306112 - - Fumarase 1 isoform 2 [Theobroma cacao]
15 Hb_005634_010 0.1026971336 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_005147_030 0.1027447042 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
17 Hb_000392_420 0.1036067769 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
18 Hb_001369_300 0.1039896782 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
19 Hb_001828_180 0.1044495343 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
20 Hb_000329_060 0.1047173138 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_010422_010 Hb_010422_010 Hb_002007_080 Hb_002007_080 Hb_010422_010--Hb_002007_080 Hb_002471_290 Hb_002471_290 Hb_010422_010--Hb_002471_290 Hb_010863_010 Hb_010863_010 Hb_010422_010--Hb_010863_010 Hb_000510_340 Hb_000510_340 Hb_010422_010--Hb_000510_340 Hb_000381_120 Hb_000381_120 Hb_010422_010--Hb_000381_120 Hb_003228_110 Hb_003228_110 Hb_010422_010--Hb_003228_110 Hb_000392_420 Hb_000392_420 Hb_002007_080--Hb_000392_420 Hb_000778_010 Hb_000778_010 Hb_002007_080--Hb_000778_010 Hb_007894_150 Hb_007894_150 Hb_002007_080--Hb_007894_150 Hb_164390_010 Hb_164390_010 Hb_002007_080--Hb_164390_010 Hb_000349_260 Hb_000349_260 Hb_002007_080--Hb_000349_260 Hb_000173_280 Hb_000173_280 Hb_002007_080--Hb_000173_280 Hb_005147_030 Hb_005147_030 Hb_002471_290--Hb_005147_030 Hb_009079_030 Hb_009079_030 Hb_002471_290--Hb_009079_030 Hb_002400_410 Hb_002400_410 Hb_002471_290--Hb_002400_410 Hb_003294_070 Hb_003294_070 Hb_002471_290--Hb_003294_070 Hb_000556_120 Hb_000556_120 Hb_002471_290--Hb_000556_120 Hb_003647_130 Hb_003647_130 Hb_002471_290--Hb_003647_130 Hb_000614_240 Hb_000614_240 Hb_010863_010--Hb_000614_240 Hb_000120_080 Hb_000120_080 Hb_010863_010--Hb_000120_080 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_005634_010 Hb_005634_010 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_002456_010 Hb_002456_010 Hb_010863_010--Hb_002456_010 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_001828_180 Hb_001828_180 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_000329_060 Hb_000329_060 Hb_000381_120--Hb_000329_060 Hb_001828_150 Hb_001828_150 Hb_000381_120--Hb_001828_150 Hb_000381_120--Hb_000556_120 Hb_000640_170 Hb_000640_170 Hb_000381_120--Hb_000640_170 Hb_000417_130 Hb_000417_130 Hb_000381_120--Hb_000417_130 Hb_009898_050 Hb_009898_050 Hb_000381_120--Hb_009898_050 Hb_002053_150 Hb_002053_150 Hb_003228_110--Hb_002053_150 Hb_003228_110--Hb_002007_080 Hb_002071_070 Hb_002071_070 Hb_003228_110--Hb_002071_070 Hb_003228_110--Hb_000778_010 Hb_001998_240 Hb_001998_240 Hb_003228_110--Hb_001998_240 Hb_003228_110--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46511 3.07483 4.62408 3.2827 2.83996 2.1463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14526 3.75124 4.58886 7.46032 3.0033

CAGE analysis