Hb_000392_420

Information

Type -
Description -
Location Contig392: 347896-354855
Sequence    

Annotation

kegg
ID rcu:RCOM_1513940
description 1-pyrroline-5-carboxylate dehydrogenase, putative (EC:1.2.1.3)
nr
ID XP_012080220.1
description PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
swissprot
ID Q40255
description Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1
trembl
ID A0A067K8B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11594 PE=3 SV=1
Gene Ontology
ID GO:0016620
description aldehyde dehydrogenase 12a1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39289: 348153-354838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_420 0.0 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
2 Hb_000778_010 0.0513191207 - - hypothetical protein [Bacillus subtilis]
3 Hb_003861_060 0.0583391264 - - PREDICTED: treacle protein [Jatropha curcas]
4 Hb_002007_080 0.0587386639 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
5 Hb_164390_010 0.0589334711 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
6 Hb_003058_120 0.0595936407 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
7 Hb_093458_040 0.0628515109 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
8 Hb_000349_260 0.0630456498 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
9 Hb_062226_130 0.0634984735 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
10 Hb_004109_320 0.06616857 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
11 Hb_000365_230 0.066866766 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
12 Hb_001359_050 0.0672106179 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006570_080 0.0700972176 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
14 Hb_005588_060 0.0705619087 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
15 Hb_003428_010 0.0706721266 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
16 Hb_005634_010 0.0707371294 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000173_280 0.0721378385 - - Speckle-type POZ protein, putative [Ricinus communis]
18 Hb_002936_010 0.072700681 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
19 Hb_007894_150 0.0733897233 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
20 Hb_168978_010 0.0736292285 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_420 Hb_000392_420 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_164390_010 Hb_164390_010 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_014834_150 Hb_014834_150 Hb_003861_060--Hb_014834_150 Hb_004052_080 Hb_004052_080 Hb_003861_060--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_003861_060--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_003861_060--Hb_003513_010 Hb_003861_060--Hb_164390_010 Hb_002007_080--Hb_000778_010 Hb_007894_150 Hb_007894_150 Hb_002007_080--Hb_007894_150 Hb_002007_080--Hb_164390_010 Hb_000349_260 Hb_000349_260 Hb_002007_080--Hb_000349_260 Hb_002007_080--Hb_000173_280 Hb_164390_010--Hb_000365_230 Hb_164390_010--Hb_007894_150 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_004109_320 Hb_004109_320 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2757 22.8761 30.6761 30.8418 16.6634 15.9284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4552 26.2236 24.9463 29.0851 22.0862

CAGE analysis