Hb_003037_020

Information

Type -
Description -
Location Contig3037: 19308-26746
Sequence    

Annotation

kegg
ID rcu:RCOM_1547900
description hypothetical protein
nr
ID KDP25880.1
description hypothetical protein JCGZ_22910 [Jatropha curcas]
swissprot
ID Q94B77
description Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2
trembl
ID A0A067K0U7
description Formin-like protein OS=Jatropha curcas GN=JCGZ_22910 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32015: 19361-20677 , PASA_asmbl_32016: 20682-20833 , PASA_asmbl_32017: 20955-23492 , PASA_asmbl_32019: 23813-24803 , PASA_asmbl_32020: 23883-24347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003037_020 0.0 - - hypothetical protein JCGZ_22910 [Jatropha curcas]
2 Hb_011883_020 0.0848107478 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_003228_110 0.0864341093 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
4 Hb_003058_260 0.090417786 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
5 Hb_000243_260 0.0921458841 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
6 Hb_021510_010 0.092757001 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
7 Hb_002071_070 0.0949583103 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
8 Hb_006816_280 0.0999172782 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
9 Hb_004096_110 0.100941811 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
10 Hb_002053_150 0.1036395879 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
11 Hb_000460_080 0.1040102237 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
12 Hb_000483_310 0.1062569292 - - PREDICTED: WD-40 repeat-containing protein MSI4-like [Jatropha curcas]
13 Hb_011282_050 0.1066220351 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
14 Hb_002007_080 0.1074896469 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
15 Hb_001124_130 0.1077397649 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_000109_180 0.1077710094 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
17 Hb_001586_030 0.1085532782 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
18 Hb_003758_010 0.1085905032 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
19 Hb_001998_240 0.1103897925 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
20 Hb_000979_220 0.1109263526 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003037_020 Hb_003037_020 Hb_011883_020 Hb_011883_020 Hb_003037_020--Hb_011883_020 Hb_003228_110 Hb_003228_110 Hb_003037_020--Hb_003228_110 Hb_003058_260 Hb_003058_260 Hb_003037_020--Hb_003058_260 Hb_000243_260 Hb_000243_260 Hb_003037_020--Hb_000243_260 Hb_021510_010 Hb_021510_010 Hb_003037_020--Hb_021510_010 Hb_002071_070 Hb_002071_070 Hb_003037_020--Hb_002071_070 Hb_005074_020 Hb_005074_020 Hb_011883_020--Hb_005074_020 Hb_002631_210 Hb_002631_210 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_002053_150 Hb_002053_150 Hb_003228_110--Hb_002053_150 Hb_002007_080 Hb_002007_080 Hb_003228_110--Hb_002007_080 Hb_003228_110--Hb_002071_070 Hb_000778_010 Hb_000778_010 Hb_003228_110--Hb_000778_010 Hb_001998_240 Hb_001998_240 Hb_003228_110--Hb_001998_240 Hb_002456_010 Hb_002456_010 Hb_003228_110--Hb_002456_010 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_003058_260--Hb_002071_070 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_003058_260--Hb_001998_240 Hb_002042_050 Hb_002042_050 Hb_000243_260--Hb_002042_050 Hb_011618_070 Hb_011618_070 Hb_000243_260--Hb_011618_070 Hb_020178_040 Hb_020178_040 Hb_000243_260--Hb_020178_040 Hb_000243_260--Hb_011883_020 Hb_003758_010 Hb_003758_010 Hb_000243_260--Hb_003758_010 Hb_000243_260--Hb_002631_210 Hb_001586_030 Hb_001586_030 Hb_021510_010--Hb_001586_030 Hb_065500_020 Hb_065500_020 Hb_021510_010--Hb_065500_020 Hb_001105_020 Hb_001105_020 Hb_021510_010--Hb_001105_020 Hb_021510_010--Hb_003058_260 Hb_011377_040 Hb_011377_040 Hb_021510_010--Hb_011377_040 Hb_002071_070--Hb_000856_040 Hb_002071_070--Hb_002042_050 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_002071_070--Hb_012632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32038 3.35599 4.40084 3.47619 2.80394 2.02778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87873 2.199 4.79293 5.60237 3.00409

CAGE analysis