Hb_011618_070

Information

Type -
Description -
Location Contig11618: 94798-109579
Sequence    

Annotation

kegg
ID mtr:MTR_2g102440
description NMDA receptor-regulated protein
nr
ID XP_003597797.1
description NMDA receptor-regulated protein [Medicago truncatula]
swissprot
ID Q9DBB4
description N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Mus musculus GN=Naa16 PE=2 SV=1
trembl
ID A0A067KLQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06237 PE=4 SV=1
Gene Ontology
ID GO:0004596
description n-alpha-acetyltransferase auxiliary subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04994: 94657-109349 , PASA_asmbl_04995: 104429-108865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_070 0.0 - - NMDA receptor-regulated protein [Medicago truncatula]
2 Hb_000243_260 0.0714654308 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
3 Hb_001488_020 0.0751643368 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
4 Hb_003758_010 0.0760488744 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
5 Hb_002631_210 0.0766630158 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
6 Hb_002042_050 0.0767967809 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
7 Hb_000206_160 0.0769590614 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
8 Hb_000304_080 0.0800752348 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
9 Hb_002675_130 0.0802766698 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
10 Hb_012632_010 0.0838395427 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
11 Hb_000510_360 0.0848652562 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
12 Hb_002272_030 0.0850488593 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
13 Hb_001817_170 0.0856470815 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
14 Hb_011883_020 0.0862371345 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_020178_040 0.0863575839 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002071_070 0.0864638639 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
17 Hb_003058_260 0.0896881289 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
18 Hb_033312_040 0.0897349515 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
19 Hb_000809_020 0.0899182041 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_001828_170 0.0907573896 - - PREDICTED: protein TPLATE [Jatropha curcas]

Gene co-expression network

sample Hb_011618_070 Hb_011618_070 Hb_000243_260 Hb_000243_260 Hb_011618_070--Hb_000243_260 Hb_001488_020 Hb_001488_020 Hb_011618_070--Hb_001488_020 Hb_003758_010 Hb_003758_010 Hb_011618_070--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_011618_070--Hb_002631_210 Hb_002042_050 Hb_002042_050 Hb_011618_070--Hb_002042_050 Hb_000206_160 Hb_000206_160 Hb_011618_070--Hb_000206_160 Hb_000243_260--Hb_002042_050 Hb_020178_040 Hb_020178_040 Hb_000243_260--Hb_020178_040 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_000243_260--Hb_003758_010 Hb_000243_260--Hb_002631_210 Hb_004324_360 Hb_004324_360 Hb_001488_020--Hb_004324_360 Hb_000270_170 Hb_000270_170 Hb_001488_020--Hb_000270_170 Hb_001817_170 Hb_001817_170 Hb_001488_020--Hb_001817_170 Hb_006100_020 Hb_006100_020 Hb_001488_020--Hb_006100_020 Hb_001488_020--Hb_003758_010 Hb_073171_070 Hb_073171_070 Hb_001488_020--Hb_073171_070 Hb_003758_010--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_003758_010--Hb_000510_360 Hb_027506_010 Hb_027506_010 Hb_003758_010--Hb_027506_010 Hb_033312_040 Hb_033312_040 Hb_003758_010--Hb_033312_040 Hb_003758_010--Hb_000206_160 Hb_006189_020 Hb_006189_020 Hb_003758_010--Hb_006189_020 Hb_002631_210--Hb_011883_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_001691_200 Hb_001691_200 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_002042_050--Hb_020178_040 Hb_002042_050--Hb_006100_020 Hb_000567_230 Hb_000567_230 Hb_002042_050--Hb_000567_230 Hb_002042_050--Hb_001817_170 Hb_000206_160--Hb_027506_010 Hb_000676_330 Hb_000676_330 Hb_000206_160--Hb_000676_330 Hb_005701_050 Hb_005701_050 Hb_000206_160--Hb_005701_050 Hb_000996_020 Hb_000996_020 Hb_000206_160--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_000206_160--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73246 11.5755 11.2545 8.47113 4.64566 5.18724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86928 4.58979 9.92427 10.0075 10.1739

CAGE analysis