Hb_001488_020

Information

Type -
Description -
Location Contig1488: 14647-22106
Sequence    

Annotation

kegg
ID cit:102627284
description probable mitochondrial-processing peptidase subunit beta-like
nr
ID XP_012084807.1
description PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
swissprot
ID Q42290
description Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=2 SV=2
trembl
ID A0A067K4S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19924 PE=3 SV=1
Gene Ontology
ID GO:0004222
description probable mitochondrial-processing peptidase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12282: 14645-21955 , PASA_asmbl_12283: 19006-20046 , PASA_asmbl_12295: 18042-66881 , PASA_asmbl_12296: 21443-21954
cDNA
(Sanger)
(ID:Location)		 009_C03.ab1: 14645-15252

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_020 0.0 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
2 Hb_004324_360 0.0644706238 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
3 Hb_000270_170 0.0669225118 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
4 Hb_001817_170 0.0671797637 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
5 Hb_006100_020 0.0676313399 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_003758_010 0.0680030148 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
7 Hb_073171_070 0.0698927061 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
8 Hb_011618_070 0.0751643368 - - NMDA receptor-regulated protein [Medicago truncatula]
9 Hb_002042_050 0.0758234646 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
10 Hb_000270_190 0.0760878576 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
11 Hb_005214_140 0.0771152825 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
12 Hb_000510_360 0.078534331 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
13 Hb_000476_060 0.0786171672 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
14 Hb_005260_030 0.0786925972 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
15 Hb_000025_350 0.0804492744 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
16 Hb_033312_130 0.0812635521 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
17 Hb_000139_080 0.0823694677 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
18 Hb_006189_020 0.082483118 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
19 Hb_000059_240 0.0835008411 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
20 Hb_048476_080 0.0856778915 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_001488_020 Hb_001488_020 Hb_004324_360 Hb_004324_360 Hb_001488_020--Hb_004324_360 Hb_000270_170 Hb_000270_170 Hb_001488_020--Hb_000270_170 Hb_001817_170 Hb_001817_170 Hb_001488_020--Hb_001817_170 Hb_006100_020 Hb_006100_020 Hb_001488_020--Hb_006100_020 Hb_003758_010 Hb_003758_010 Hb_001488_020--Hb_003758_010 Hb_073171_070 Hb_073171_070 Hb_001488_020--Hb_073171_070 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_000960_080 Hb_000960_080 Hb_000270_170--Hb_000960_080 Hb_001507_050 Hb_001507_050 Hb_000270_170--Hb_001507_050 Hb_011674_040 Hb_011674_040 Hb_000270_170--Hb_011674_040 Hb_000270_170--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000270_170--Hb_000318_150 Hb_001817_170--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_001817_170--Hb_006189_020 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_000139_080 Hb_000139_080 Hb_001817_170--Hb_000139_080 Hb_006100_020--Hb_002042_050 Hb_033312_130 Hb_033312_130 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_001008_130 Hb_001008_130 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_000510_360 Hb_000510_360 Hb_003758_010--Hb_000510_360 Hb_027506_010 Hb_027506_010 Hb_003758_010--Hb_027506_010 Hb_003758_010--Hb_033312_040 Hb_000206_160 Hb_000206_160 Hb_003758_010--Hb_000206_160 Hb_003758_010--Hb_006189_020 Hb_003040_050 Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_006663_060 Hb_006663_060 Hb_073171_070--Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_073171_070--Hb_009288_020 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9609 47.8905 58.2878 43.7103 23.666 19.8079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9865 24.7762 36.1905 49.1781 67.5093

CAGE analysis