Hb_001586_030

Information

Type -
Description -
Location Contig1586: 47587-60190
Sequence    

Annotation

kegg
ID rcu:RCOM_1043210
description aspartyl-tRNA synthetase, putative (EC:6.1.1.12)
nr
ID XP_002523450.1
description aspartyl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID P15178
description Aspartate--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1
trembl
ID B9SBT1
description Aspartyl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_1043210 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aspartate--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14045: 47675-59057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001586_030 0.0 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
2 Hb_011883_020 0.0743658111 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_004096_110 0.0776512612 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_021510_010 0.0804485478 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
5 Hb_005074_020 0.0829923445 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
6 Hb_001691_200 0.0870372578 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
7 Hb_000535_050 0.0878550181 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
8 Hb_000109_180 0.0882144384 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
9 Hb_007933_040 0.0890837375 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
10 Hb_000363_040 0.0894442662 - - Protein transport protein Sec24A, putative [Ricinus communis]
11 Hb_003340_010 0.0898098564 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
12 Hb_001105_020 0.0928054627 - - expressed protein, putative [Ricinus communis]
13 Hb_065500_020 0.0958530802 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
14 Hb_001587_030 0.0966762251 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
15 Hb_011377_040 0.0969430723 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
16 Hb_000649_060 0.0974951318 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
17 Hb_001975_150 0.0984562982 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
18 Hb_002686_200 0.0989363861 - - glucosidase II beta subunit, putative [Ricinus communis]
19 Hb_000209_100 0.0991914615 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
20 Hb_003280_020 0.0993628432 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001586_030 Hb_001586_030 Hb_011883_020 Hb_011883_020 Hb_001586_030--Hb_011883_020 Hb_004096_110 Hb_004096_110 Hb_001586_030--Hb_004096_110 Hb_021510_010 Hb_021510_010 Hb_001586_030--Hb_021510_010 Hb_005074_020 Hb_005074_020 Hb_001586_030--Hb_005074_020 Hb_001691_200 Hb_001691_200 Hb_001586_030--Hb_001691_200 Hb_000535_050 Hb_000535_050 Hb_001586_030--Hb_000535_050 Hb_011883_020--Hb_005074_020 Hb_002631_210 Hb_002631_210 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_011883_020--Hb_004096_110 Hb_011883_020--Hb_001691_200 Hb_021576_010 Hb_021576_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_004096_110--Hb_000327_250 Hb_000979_220 Hb_000979_220 Hb_004096_110--Hb_000979_220 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_065500_020 Hb_065500_020 Hb_021510_010--Hb_065500_020 Hb_001105_020 Hb_001105_020 Hb_021510_010--Hb_001105_020 Hb_003058_260 Hb_003058_260 Hb_021510_010--Hb_003058_260 Hb_003037_020 Hb_003037_020 Hb_021510_010--Hb_003037_020 Hb_011377_040 Hb_011377_040 Hb_021510_010--Hb_011377_040 Hb_000080_110 Hb_000080_110 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_001691_200--Hb_002631_210 Hb_001691_200--Hb_004208_050 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_000666_010 Hb_000666_010 Hb_000535_050--Hb_000666_010 Hb_007904_300 Hb_007904_300 Hb_000535_050--Hb_007904_300 Hb_004218_180 Hb_004218_180 Hb_000535_050--Hb_004218_180 Hb_000227_160 Hb_000227_160 Hb_000535_050--Hb_000227_160 Hb_000109_180 Hb_000109_180 Hb_000535_050--Hb_000109_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.58174 8.80802 10.6285 12.2784 4.77147 5.81602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65395 4.45372 10.967 17.6753 13.5864

CAGE analysis