Hb_011925_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig11925: 5222-8717
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012086122.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067JT75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21061 PE=4 SV=1
Gene Ontology
ID GO:0043531
description leucine-rich repeat containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05686: 5423-5610 , PASA_asmbl_05687: 5810-6430 , PASA_asmbl_05691: 8018-9254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011925_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000049_250 0.0595339174 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
3 Hb_005074_020 0.0705651367 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_000271_120 0.0733766731 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
5 Hb_000080_110 0.0733868942 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
6 Hb_000321_090 0.0753042283 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
7 Hb_005181_050 0.0806022138 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
8 Hb_000205_250 0.0851949395 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
9 Hb_002235_310 0.0868587705 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
10 Hb_000318_150 0.0872920642 - - RNA-binding protein Nova-1, putative [Ricinus communis]
11 Hb_006478_030 0.0875788117 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_000960_080 0.0887178424 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
13 Hb_033799_010 0.089472808 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
14 Hb_000220_120 0.0897641341 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
15 Hb_000125_180 0.089846467 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
16 Hb_027760_060 0.0904193491 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_000059_240 0.0925332827 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
18 Hb_000866_110 0.0941365471 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
19 Hb_080147_050 0.0965488416 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_001006_010 0.0972717492 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_011925_020 Hb_011925_020 Hb_000049_250 Hb_000049_250 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_000271_120 Hb_000271_120 Hb_011925_020--Hb_000271_120 Hb_000080_110 Hb_000080_110 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_000049_250--Hb_000321_090 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000271_120--Hb_000049_250 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_000080_110--Hb_000321_090 Hb_000080_110--Hb_033799_010 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_000321_090--Hb_020805_180 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_000809_250 Hb_000809_250 Hb_005181_050--Hb_000809_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09745 5.83436 4.06339 4.64979 1.19805 2.51429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52074 1.34766 2.41509 7.45103 5.18062

CAGE analysis