Hb_000271_120

Information

Type -
Description -
Location Contig271: 242621-246949
Sequence    

Annotation

kegg
ID cit:102612007
description U-box domain-containing protein 13-like
nr
ID XP_010253199.1
description PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID W9RU20
description U-box domain-containing protein 13 OS=Morus notabilis GN=L484_025210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28416: 244057-244336 , PASA_asmbl_28417: 244356-246020 , PASA_asmbl_28418: 246089-246627 , PASA_asmbl_28419: 246700-247093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000271_120 0.0 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
2 Hb_011925_020 0.0733766731 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_000205_250 0.0838580956 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
4 Hb_000007_410 0.0911506157 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
5 Hb_000049_250 0.0922590695 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
6 Hb_000220_120 0.0960393222 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
7 Hb_001006_010 0.0965438452 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_002235_310 0.098774518 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
9 Hb_000866_110 0.1012705971 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
10 Hb_143629_020 0.1022563814 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
11 Hb_000321_090 0.1024550799 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
12 Hb_001159_020 0.1033803982 - - -
13 Hb_000227_330 0.1063194981 - - Acyl-CoA synthetase [Ricinus communis]
14 Hb_000157_070 0.1074804746 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
15 Hb_001322_180 0.1093207348 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
16 Hb_004586_090 0.1096300598 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
17 Hb_000345_340 0.1114573251 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
18 Hb_003964_110 0.1120160208 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
19 Hb_000665_260 0.115156022 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
20 Hb_000985_050 0.1158058587 - - PREDICTED: uncharacterized protein LOC105647985 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000271_120 Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_000271_120--Hb_011925_020 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_011925_020--Hb_000049_250 Hb_005074_020 Hb_005074_020 Hb_011925_020--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_011925_020--Hb_000080_110 Hb_000321_090 Hb_000321_090 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_002235_310 Hb_002235_310 Hb_000205_250--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000205_250--Hb_000866_110 Hb_000205_250--Hb_011925_020 Hb_000125_180 Hb_000125_180 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_004586_090 Hb_004586_090 Hb_000007_410--Hb_004586_090 Hb_000015_200 Hb_000015_200 Hb_000007_410--Hb_000015_200 Hb_000258_090 Hb_000258_090 Hb_000007_410--Hb_000258_090 Hb_003964_110 Hb_003964_110 Hb_000007_410--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_000007_410--Hb_000599_360 Hb_000049_250--Hb_000321_090 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_000049_250--Hb_005074_020 Hb_000049_250--Hb_000220_120 Hb_000200_110 Hb_000200_110 Hb_000220_120--Hb_000200_110 Hb_000787_200 Hb_000787_200 Hb_000220_120--Hb_000787_200 Hb_001477_020 Hb_001477_020 Hb_000220_120--Hb_001477_020 Hb_000428_030 Hb_000428_030 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150 Hb_007472_080 Hb_007472_080 Hb_001006_010--Hb_007472_080 Hb_001006_010--Hb_000866_110 Hb_001006_010--Hb_005181_050 Hb_001006_010--Hb_011925_020 Hb_001006_010--Hb_000049_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.543558 2.12976 1.60203 1.35647 0.302493 0.759788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.395961 0.384856 0.48616 2.76408 1.70269

CAGE analysis