Hb_001477_020

Information

Type transcription factor
Description TF Family: HB
Location Contig1477: 8957-24933
Sequence    

Annotation

kegg
ID rcu:RCOM_1172170
description homeobox protein, putative
nr
ID XP_012088213.1
description PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
swissprot
ID P09026
description Homeobox protein Hox-B3 OS=Mus musculus GN=Hoxb3 PE=2 SV=4
trembl
ID A0A067JX12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25736 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeodomain-like transcriptional isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12052: 9220-16563 , PASA_asmbl_12053: 9220-16563 , PASA_asmbl_12055: 17396-24303
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_020 0.0 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
2 Hb_000200_110 0.0591394239 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
3 Hb_000220_120 0.0754514044 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
4 Hb_003849_280 0.0842947619 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
5 Hb_007012_040 0.0876190551 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
6 Hb_007245_020 0.0918303436 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
7 Hb_001124_050 0.0928266054 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
8 Hb_123531_010 0.0930628243 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
9 Hb_000928_090 0.0954223123 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
10 Hb_004109_380 0.095837267 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
11 Hb_002005_030 0.0968640774 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
12 Hb_002357_070 0.0969046913 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
13 Hb_004223_160 0.0970454803 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
14 Hb_000243_400 0.0977229536 - - PREDICTED: nucleolin-like [Jatropha curcas]
15 Hb_005181_050 0.097764587 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
16 Hb_000434_070 0.0984335014 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
17 Hb_000844_050 0.0987912624 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
18 Hb_171554_040 0.100301222 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
19 Hb_003680_020 0.1004324003 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000445_130 0.100478676 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]

Gene co-expression network

sample Hb_001477_020 Hb_001477_020 Hb_000200_110 Hb_000200_110 Hb_001477_020--Hb_000200_110 Hb_000220_120 Hb_000220_120 Hb_001477_020--Hb_000220_120 Hb_003849_280 Hb_003849_280 Hb_001477_020--Hb_003849_280 Hb_007012_040 Hb_007012_040 Hb_001477_020--Hb_007012_040 Hb_007245_020 Hb_007245_020 Hb_001477_020--Hb_007245_020 Hb_001124_050 Hb_001124_050 Hb_001477_020--Hb_001124_050 Hb_000200_110--Hb_000220_120 Hb_000428_030 Hb_000428_030 Hb_000200_110--Hb_000428_030 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000331_100 Hb_000331_100 Hb_000200_110--Hb_000331_100 Hb_143629_020 Hb_143629_020 Hb_000200_110--Hb_143629_020 Hb_000049_250 Hb_000049_250 Hb_000220_120--Hb_000049_250 Hb_000787_200 Hb_000787_200 Hb_000220_120--Hb_000787_200 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150 Hb_004306_120 Hb_004306_120 Hb_003849_280--Hb_004306_120 Hb_011174_020 Hb_011174_020 Hb_003849_280--Hb_011174_020 Hb_033312_130 Hb_033312_130 Hb_003849_280--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_003849_280--Hb_001008_130 Hb_000844_050 Hb_000844_050 Hb_003849_280--Hb_000844_050 Hb_013459_020 Hb_013459_020 Hb_003849_280--Hb_013459_020 Hb_003124_270 Hb_003124_270 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_000154_130 Hb_000154_130 Hb_007012_040--Hb_000154_130 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_002357_070 Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_123531_010 Hb_123531_010 Hb_007245_020--Hb_123531_010 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_000172_340 Hb_000172_340 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_009486_170 Hb_009486_170 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24196 24.7585 10.0876 14.6258 9.03339 7.50728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19919 6.10533 4.43974 23.0449 24.4532

CAGE analysis