Hb_000243_400

Information

Type -
Description -
Location Contig243: 348476-356825
Sequence    

Annotation

kegg
ID rcu:RCOM_0292330
description RNA binding protein, putative
nr
ID XP_012065538.1
description PREDICTED: nucleolin-like [Jatropha curcas]
swissprot
ID Q7TP47
description Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1
trembl
ID A0A067LHB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06501 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleolin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25415: 351612-356781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_400 0.0 - - PREDICTED: nucleolin-like [Jatropha curcas]
2 Hb_004586_090 0.0704289987 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
3 Hb_000133_090 0.0763741501 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
4 Hb_000200_110 0.0764865866 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
5 Hb_000413_250 0.0780152208 - - Cysteine-rich RLK 29 [Theobroma cacao]
6 Hb_143629_020 0.082004231 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
7 Hb_006794_020 0.0878014435 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
8 Hb_000331_100 0.0880031443 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
9 Hb_001477_020 0.0977229536 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
10 Hb_014006_010 0.1011743551 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
11 Hb_006478_030 0.1034973337 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_009476_120 0.1038839713 - - Clathrin heavy chain 1 [Glycine soja]
13 Hb_003964_110 0.1052117048 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
14 Hb_000321_090 0.1056041016 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
15 Hb_000445_130 0.1057974232 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
16 Hb_003124_270 0.106036316 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
17 Hb_160608_010 0.1075426333 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
18 Hb_122273_020 0.1086349929 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
19 Hb_000220_120 0.1087734132 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
20 Hb_000008_410 0.1094960766 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000243_400 Hb_000243_400 Hb_004586_090 Hb_004586_090 Hb_000243_400--Hb_004586_090 Hb_000133_090 Hb_000133_090 Hb_000243_400--Hb_000133_090 Hb_000200_110 Hb_000200_110 Hb_000243_400--Hb_000200_110 Hb_000413_250 Hb_000413_250 Hb_000243_400--Hb_000413_250 Hb_143629_020 Hb_143629_020 Hb_000243_400--Hb_143629_020 Hb_006794_020 Hb_006794_020 Hb_000243_400--Hb_006794_020 Hb_004586_090--Hb_143629_020 Hb_003124_270 Hb_003124_270 Hb_004586_090--Hb_003124_270 Hb_005181_050 Hb_005181_050 Hb_004586_090--Hb_005181_050 Hb_002078_470 Hb_002078_470 Hb_004586_090--Hb_002078_470 Hb_000844_050 Hb_000844_050 Hb_004586_090--Hb_000844_050 Hb_000133_090--Hb_000413_250 Hb_000331_100 Hb_000331_100 Hb_000133_090--Hb_000331_100 Hb_000133_090--Hb_006794_020 Hb_000072_020 Hb_000072_020 Hb_000133_090--Hb_000072_020 Hb_003964_110 Hb_003964_110 Hb_000133_090--Hb_003964_110 Hb_001477_020 Hb_001477_020 Hb_000200_110--Hb_001477_020 Hb_000220_120 Hb_000220_120 Hb_000200_110--Hb_000220_120 Hb_000428_030 Hb_000428_030 Hb_000200_110--Hb_000428_030 Hb_000200_110--Hb_000331_100 Hb_000200_110--Hb_143629_020 Hb_002918_320 Hb_002918_320 Hb_000413_250--Hb_002918_320 Hb_004696_070 Hb_004696_070 Hb_000413_250--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_000413_250--Hb_001951_100 Hb_000413_250--Hb_000331_100 Hb_143629_020--Hb_006794_020 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_143629_020--Hb_002078_470 Hb_013358_060 Hb_013358_060 Hb_006794_020--Hb_013358_060 Hb_005885_030 Hb_005885_030 Hb_006794_020--Hb_005885_030 Hb_010775_010 Hb_010775_010 Hb_006794_020--Hb_010775_010 Hb_006794_020--Hb_000331_100 Hb_000270_700 Hb_000270_700 Hb_006794_020--Hb_000270_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6614 18.7445 9.76379 10.5968 6.08605 3.83618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94779 2.25991 3.55715 16.1781 16.7336

CAGE analysis