Hb_000413_250

Information

Type -
Description -
Location Contig413: 178603-218459
Sequence    

Annotation

kegg
ID tcc:TCM_030102
description Cysteine-rich RLK 29
nr
ID XP_007025939.1
description Cysteine-rich RLK 29 [Theobroma cacao]
swissprot
ID Q9M0X5
description Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=3 SV=1
trembl
ID A0A0E0I4D8
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0016772
description cysteine-rich rlk 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40944: 182101-182952 , PASA_asmbl_40945: 183870-184166 , PASA_asmbl_40948: 193080-196634 , PASA_asmbl_40950: 198126-199327 , PASA_asmbl_40951: 199358-200244 , PASA_asmbl_40952: 199356-201155 , PASA_asmbl_40953: 205551-208394
cDNA
(Sanger)
(ID:Location)		 029_G05r.ab1: 191640-192450

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_250 0.0 - - Cysteine-rich RLK 29 [Theobroma cacao]
2 Hb_002918_320 0.0701030114 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
3 Hb_000243_400 0.0780152208 - - PREDICTED: nucleolin-like [Jatropha curcas]
4 Hb_004696_070 0.0856285418 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
5 Hb_001951_100 0.0867114374 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
6 Hb_000133_090 0.0890782256 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
7 Hb_000331_100 0.092449932 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
8 Hb_000445_130 0.0933912904 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
9 Hb_000200_110 0.0978684188 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
10 Hb_006794_020 0.0980156508 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
11 Hb_000473_150 0.0983773505 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
12 Hb_008686_020 0.1016040873 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
13 Hb_000340_360 0.1045929761 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
14 Hb_001561_010 0.1056062767 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
15 Hb_004551_020 0.1057911266 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
16 Hb_007012_040 0.1073326941 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
17 Hb_002005_030 0.1109243855 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
18 Hb_012490_010 0.1114111687 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
19 Hb_122273_020 0.1124753882 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
20 Hb_014006_010 0.1138934804 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]

Gene co-expression network

sample Hb_000413_250 Hb_000413_250 Hb_002918_320 Hb_002918_320 Hb_000413_250--Hb_002918_320 Hb_000243_400 Hb_000243_400 Hb_000413_250--Hb_000243_400 Hb_004696_070 Hb_004696_070 Hb_000413_250--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_000413_250--Hb_001951_100 Hb_000133_090 Hb_000133_090 Hb_000413_250--Hb_000133_090 Hb_000331_100 Hb_000331_100 Hb_000413_250--Hb_000331_100 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_002918_320--Hb_004696_070 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_004586_090 Hb_004586_090 Hb_000243_400--Hb_004586_090 Hb_000243_400--Hb_000133_090 Hb_000200_110 Hb_000200_110 Hb_000243_400--Hb_000200_110 Hb_143629_020 Hb_143629_020 Hb_000243_400--Hb_143629_020 Hb_006794_020 Hb_006794_020 Hb_000243_400--Hb_006794_020 Hb_012490_010 Hb_012490_010 Hb_004696_070--Hb_012490_010 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_020805_150 Hb_020805_150 Hb_004696_070--Hb_020805_150 Hb_004696_070--Hb_001951_100 Hb_004696_070--Hb_000331_100 Hb_001951_100--Hb_008686_020 Hb_000367_020 Hb_000367_020 Hb_001951_100--Hb_000367_020 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_000133_090--Hb_000331_100 Hb_000133_090--Hb_006794_020 Hb_000072_020 Hb_000072_020 Hb_000133_090--Hb_000072_020 Hb_003964_110 Hb_003964_110 Hb_000133_090--Hb_003964_110 Hb_008165_020 Hb_008165_020 Hb_000331_100--Hb_008165_020 Hb_000428_030 Hb_000428_030 Hb_000331_100--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.69749 21.6921 7.41502 9.94965 4.61125 3.76915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42156 2.5002 3.10242 11.8091 14.5923

CAGE analysis