Hb_000200_110

Information

Type -
Description -
Location Contig200: 119877-143271
Sequence    

Annotation

kegg
ID rcu:RCOM_0577590
description ATP-dependent RNA helicase, putative
nr
ID XP_012075701.1
description PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
swissprot
ID Q8VHK9
description ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=1 SV=2
trembl
ID A0A067KT31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09292 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx36 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20203: 121131-121848 , PASA_asmbl_20204: 124036-128484 , PASA_asmbl_20205: 128722-134908 , PASA_asmbl_20207: 142735-142847 , PASA_asmbl_20209: 144031-147629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_110 0.0 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
2 Hb_001477_020 0.0591394239 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
3 Hb_000220_120 0.0621377786 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
4 Hb_000428_030 0.0682813667 - - hypothetical protein RCOM_1520720 [Ricinus communis]
5 Hb_000243_400 0.0764865866 - - PREDICTED: nucleolin-like [Jatropha curcas]
6 Hb_000331_100 0.0793745997 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
7 Hb_143629_020 0.0807126636 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
8 Hb_000170_100 0.0832202015 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
9 Hb_002078_470 0.0835144161 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
10 Hb_007012_040 0.0841722908 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
11 Hb_006478_030 0.0847774261 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_004586_090 0.0875479638 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
13 Hb_004551_020 0.0886131502 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
14 Hb_000035_100 0.0893119828 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_013358_060 0.0893800842 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
16 Hb_000664_120 0.0930066499 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
17 Hb_004223_160 0.0932137516 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
18 Hb_002005_030 0.093584583 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
19 Hb_000934_210 0.095046705 - - suppressor of ty, putative [Ricinus communis]
20 Hb_001341_160 0.0951850821 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_110 Hb_000200_110 Hb_001477_020 Hb_001477_020 Hb_000200_110--Hb_001477_020 Hb_000220_120 Hb_000220_120 Hb_000200_110--Hb_000220_120 Hb_000428_030 Hb_000428_030 Hb_000200_110--Hb_000428_030 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000331_100 Hb_000331_100 Hb_000200_110--Hb_000331_100 Hb_143629_020 Hb_143629_020 Hb_000200_110--Hb_143629_020 Hb_001477_020--Hb_000220_120 Hb_003849_280 Hb_003849_280 Hb_001477_020--Hb_003849_280 Hb_007012_040 Hb_007012_040 Hb_001477_020--Hb_007012_040 Hb_007245_020 Hb_007245_020 Hb_001477_020--Hb_007245_020 Hb_001124_050 Hb_001124_050 Hb_001477_020--Hb_001124_050 Hb_000049_250 Hb_000049_250 Hb_000220_120--Hb_000049_250 Hb_000787_200 Hb_000787_200 Hb_000220_120--Hb_000787_200 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_004586_090 Hb_004586_090 Hb_000243_400--Hb_004586_090 Hb_000133_090 Hb_000133_090 Hb_000243_400--Hb_000133_090 Hb_000413_250 Hb_000413_250 Hb_000243_400--Hb_000413_250 Hb_000243_400--Hb_143629_020 Hb_006794_020 Hb_006794_020 Hb_000243_400--Hb_006794_020 Hb_000331_100--Hb_008165_020 Hb_013358_060 Hb_013358_060 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_003964_110 Hb_003964_110 Hb_000331_100--Hb_003964_110 Hb_009476_120 Hb_009476_120 Hb_000331_100--Hb_009476_120 Hb_143629_020--Hb_004586_090 Hb_143629_020--Hb_006794_020 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_143629_020--Hb_002078_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92121 8.99632 4.28927 3.89917 2.91189 2.43729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65375 1.78818 1.63673 7.26075 7.00318

CAGE analysis