Hb_000260_760

Information

Type -
Description -
Location Contig260: 562110-576524
Sequence    

Annotation

kegg
ID rcu:RCOM_1324510
description chromosome region maintenance protein 1/exportin, putative
nr
ID XP_012090921.1
description PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
swissprot
ID Q9SMV6
description Protein EXPORTIN 1A OS=Arabidopsis thaliana GN=XPO1 PE=1 SV=1
trembl
ID A0A067JG87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00570 PE=4 SV=1
Gene Ontology
ID GO:0005622
description exportin 1a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27063: 562111-576329 , PASA_asmbl_27064: 567336-568822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_760 0.0 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
2 Hb_000030_140 0.0492552317 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
3 Hb_002461_020 0.0504869948 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
4 Hb_000428_030 0.0596878806 - - hypothetical protein RCOM_1520720 [Ricinus communis]
5 Hb_000996_020 0.060726915 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_009178_010 0.0620329761 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
7 Hb_170077_010 0.0635168127 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_005403_010 0.0640377464 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
9 Hb_000110_350 0.0648852866 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
10 Hb_000172_360 0.0653257595 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
11 Hb_000034_110 0.065562154 - - sentrin/sumo-specific protease, putative [Ricinus communis]
12 Hb_005333_140 0.0657176206 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
13 Hb_008165_020 0.0707399646 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
14 Hb_000358_220 0.0711809159 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
15 Hb_005305_100 0.0714276027 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
16 Hb_000046_600 0.0716933544 - - PREDICTED: cullin-1-like [Jatropha curcas]
17 Hb_000373_170 0.0730860714 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
18 Hb_023344_140 0.0745301118 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
19 Hb_008642_060 0.0773295793 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
20 Hb_000179_190 0.0779641597 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000260_760 Hb_000260_760 Hb_000030_140 Hb_000030_140 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_009178_010 Hb_009178_010 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_000030_140--Hb_002461_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350 Hb_002461_020--Hb_005333_140 Hb_002461_020--Hb_000996_020 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_002461_020--Hb_170077_010 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_004551_020 Hb_004551_020 Hb_000428_030--Hb_004551_020 Hb_000200_110 Hb_000200_110 Hb_000428_030--Hb_000200_110 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_000996_020--Hb_005333_140 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_000034_110 Hb_000034_110 Hb_009178_010--Hb_000034_110 Hb_009178_010--Hb_000030_140 Hb_000956_040 Hb_000956_040 Hb_009178_010--Hb_000956_040 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1083 45.2295 39.8138 27.913 20.0093 19.4453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88396 10.6293 10.1372 28.0169 33.9514

CAGE analysis