Hb_000034_110

Information

Type -
Description -
Location Contig34: 211554-229472
Sequence    

Annotation

kegg
ID rcu:RCOM_1039430
description sentrin/sumo-specific protease, putative
nr
ID XP_002514040.1
description sentrin/sumo-specific protease, putative [Ricinus communis]
swissprot
ID Q8L7S0
description Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=1 SV=3
trembl
ID B9RJX1
description Sentrin/sumo-specific protease, putative OS=Ricinus communis GN=RCOM_1039430 PE=4 SV=1
Gene Ontology
ID GO:0008234
description probable ubiquitin-like-specific protease 2b isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35484: 218649-219130 , PASA_asmbl_35485: 227383-228138 , PASA_asmbl_35486: 228215-229311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_110 0.0 - - sentrin/sumo-specific protease, putative [Ricinus communis]
2 Hb_000270_700 0.0539312274 - - PREDICTED: protease Do-like 9 [Populus euphratica]
3 Hb_000956_040 0.0651490856 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
4 Hb_000260_760 0.065562154 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
5 Hb_009178_010 0.0678622123 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
6 Hb_002686_410 0.0704643339 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
7 Hb_005403_010 0.072868007 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
8 Hb_000030_140 0.0749090587 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_000172_360 0.0751454005 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
10 Hb_005305_100 0.0755649669 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_000173_190 0.0765436148 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033642_120 0.0772207788 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
13 Hb_004375_110 0.0778515125 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
14 Hb_005333_140 0.0788784092 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
15 Hb_009158_060 0.0794408475 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
16 Hb_000110_350 0.0801605895 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
17 Hb_170077_010 0.0802480986 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_008165_020 0.0804460463 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_000317_110 0.0806837361 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_005834_040 0.0817409636 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000034_110 Hb_000034_110 Hb_000270_700 Hb_000270_700 Hb_000034_110--Hb_000270_700 Hb_000956_040 Hb_000956_040 Hb_000034_110--Hb_000956_040 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_009178_010 Hb_009178_010 Hb_000034_110--Hb_009178_010 Hb_002686_410 Hb_002686_410 Hb_000034_110--Hb_002686_410 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_000270_700--Hb_002686_410 Hb_005885_030 Hb_005885_030 Hb_000270_700--Hb_005885_030 Hb_003725_010 Hb_003725_010 Hb_000270_700--Hb_003725_010 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_005305_100 Hb_005305_100 Hb_000956_040--Hb_005305_100 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_000030_140 Hb_000030_140 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_000260_760--Hb_009178_010 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_009178_010--Hb_002686_410 Hb_009178_010--Hb_000030_140 Hb_009178_010--Hb_000956_040 Hb_002686_410--Hb_005885_030 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_002686_410--Hb_000030_140 Hb_005403_010--Hb_170077_010 Hb_000046_600 Hb_000046_600 Hb_005403_010--Hb_000046_600 Hb_023344_140 Hb_023344_140 Hb_005403_010--Hb_023344_140 Hb_000640_190 Hb_000640_190 Hb_005403_010--Hb_000640_190 Hb_000110_350 Hb_000110_350 Hb_005403_010--Hb_000110_350 Hb_005403_010--Hb_000260_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93996 14.4396 15.3659 10.4023 6.28086 4.23956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16776 3.79913 4.43033 9.16985 9.68875

CAGE analysis