Hb_033152_090

Information

Type -
Description -
Location Contig33152: 77380-82536
Sequence    

Annotation

kegg
ID rcu:RCOM_0774030
description Serine/threonine-protein kinase SAPK10, putative (EC:2.7.11.1)
nr
ID XP_012480268.1
description PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
swissprot
ID Q940H6
description Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1
trembl
ID A0A0D2NHR5
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G239800 PE=4 SV=1
Gene Ontology
ID GO:0005737
description serine threonine-protein kinase srk2e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34858: 77436-82901 , PASA_asmbl_34859: 77952-80949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_090 0.0 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
2 Hb_000640_190 0.0567833182 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
3 Hb_000258_420 0.0589429682 - - sucrose transporter 2A [Hevea brasiliensis]
4 Hb_001009_120 0.0612670722 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
5 Hb_000956_040 0.0672774382 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
6 Hb_000815_310 0.0682132551 - - protein kinase, putative [Ricinus communis]
7 Hb_003777_130 0.0703114347 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
8 Hb_005288_140 0.0745527756 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
9 Hb_003540_250 0.0772354195 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
10 Hb_001699_010 0.0784464935 - - drought-inducible protein [Manihot esculenta]
11 Hb_002965_050 0.0797555161 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
12 Hb_010287_020 0.0804277347 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_000179_190 0.0829599763 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
14 Hb_000261_280 0.0831266856 - - BnaA10g23810D [Brassica napus]
15 Hb_006452_180 0.0839669233 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
16 Hb_000048_080 0.0848967835 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
17 Hb_004319_050 0.0852930933 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
18 Hb_003018_030 0.0853560327 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
19 Hb_002249_020 0.0871687984 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
20 Hb_003925_060 0.0889022387 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_033152_090 Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_000258_420 Hb_000258_420 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_000640_190--Hb_001009_120 Hb_002249_020 Hb_002249_020 Hb_000640_190--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160 Hb_000258_420--Hb_003777_130 Hb_001699_010 Hb_001699_010 Hb_000258_420--Hb_001699_010 Hb_002272_240 Hb_002272_240 Hb_000258_420--Hb_002272_240 Hb_000680_120 Hb_000680_120 Hb_000258_420--Hb_000680_120 Hb_004531_150 Hb_004531_150 Hb_000258_420--Hb_004531_150 Hb_001009_120--Hb_000956_040 Hb_006452_180 Hb_006452_180 Hb_001009_120--Hb_006452_180 Hb_004319_050 Hb_004319_050 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_005305_100 Hb_005305_100 Hb_000956_040--Hb_005305_100 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_000815_310--Hb_003777_130 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_003777_130--Hb_000640_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6013 70.0833 68.6846 50.7045 20.7627 20.3647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9166 17.6769 19.4868 21.2971 37.2478

CAGE analysis