Hb_001009_120

Information

Type -
Description -
Location Contig1009: 70650-77947
Sequence    

Annotation

kegg
ID rcu:RCOM_1506930
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012079887.1
description PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
swissprot
ID Q9FGW9
description Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2
trembl
ID A0A067K4A4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11333 PE=4 SV=1
Gene Ontology
ID GO:0004402
description transcription factor gte10 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00525: 73438-73644 , PASA_asmbl_00526: 74362-74843 , PASA_asmbl_00527: 70730-76413 , PASA_asmbl_00528: 76562-77951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_120 0.0 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
2 Hb_033152_090 0.0612670722 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
3 Hb_000640_190 0.0648933427 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
4 Hb_000956_040 0.0675234477 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
5 Hb_006452_180 0.0812836926 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
6 Hb_004319_050 0.0812953506 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
7 Hb_009178_010 0.0833752739 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
8 Hb_000034_110 0.0850551682 - - sentrin/sumo-specific protease, putative [Ricinus communis]
9 Hb_008725_050 0.0850881965 - - syntaxin, putative [Ricinus communis]
10 Hb_000796_120 0.0853504378 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
11 Hb_000421_110 0.0870119694 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
12 Hb_000048_080 0.0870362252 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
13 Hb_001369_030 0.0888545156 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
14 Hb_000418_050 0.0890785396 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
15 Hb_004526_010 0.0891289665 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
16 Hb_010287_020 0.0893002831 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
17 Hb_000261_280 0.0895994972 - - BnaA10g23810D [Brassica napus]
18 Hb_000086_430 0.0897187537 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
19 Hb_003925_060 0.0905404269 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
20 Hb_003177_070 0.0914792572 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001009_120 Hb_001009_120 Hb_033152_090 Hb_033152_090 Hb_001009_120--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_001009_120--Hb_000640_190 Hb_000956_040 Hb_000956_040 Hb_001009_120--Hb_000956_040 Hb_006452_180 Hb_006452_180 Hb_001009_120--Hb_006452_180 Hb_004319_050 Hb_004319_050 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_033152_090--Hb_000640_190 Hb_000258_420 Hb_000258_420 Hb_033152_090--Hb_000258_420 Hb_033152_090--Hb_000956_040 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_002249_020 Hb_002249_020 Hb_000640_190--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160 Hb_005305_100 Hb_005305_100 Hb_000956_040--Hb_005305_100 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_006452_180--Hb_010287_020 Hb_000048_080 Hb_000048_080 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_000260_760 Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_009178_010--Hb_000034_110 Hb_000030_140 Hb_000030_140 Hb_009178_010--Hb_000030_140 Hb_009178_010--Hb_000956_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3256 35.7044 42.1552 20.6907 11.7554 10.7626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62873 8.17681 10.1851 13.0291 16.9488

CAGE analysis