Hb_002249_020

Information

Type -
Description -
Location Contig2249: 9351-16931
Sequence    

Annotation

kegg
ID rcu:RCOM_1504160
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012090601.1
description PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
swissprot
ID Q75QN6
description Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1
trembl
ID A0A067JRC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26381 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase phs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23384: 5199-8625 , PASA_asmbl_23385: 9510-16915 , PASA_asmbl_23386: 9516-13714 , PASA_asmbl_23387: 15643-15890 , PASA_asmbl_23388: 9616-9750
cDNA
(Sanger)
(ID:Location)		 029_D20.ab1: 9514-10311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_020 0.0 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
2 Hb_006846_170 0.0645393425 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
3 Hb_000640_190 0.0652419488 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
4 Hb_003449_100 0.0718070186 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
5 Hb_003925_060 0.0772878784 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
6 Hb_006022_010 0.0799908368 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
7 Hb_003228_100 0.0802609495 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
8 Hb_003506_030 0.0827012513 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000086_270 0.0838650509 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
10 Hb_088584_010 0.0860915713 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
11 Hb_016448_010 0.086789 - - Protein MYG1, putative [Ricinus communis]
12 Hb_033152_090 0.0871687984 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
13 Hb_000317_110 0.0901435017 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_000258_420 0.0921224473 - - sucrose transporter 2A [Hevea brasiliensis]
15 Hb_000300_550 0.0923007644 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
16 Hb_000089_210 0.0931100015 - - unknown [Medicago truncatula]
17 Hb_001699_010 0.0932498812 - - drought-inducible protein [Manihot esculenta]
18 Hb_000327_330 0.0945130517 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001009_120 0.0946473286 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
20 Hb_023344_140 0.0960665154 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_020 Hb_002249_020 Hb_006846_170 Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_003228_100 Hb_003228_100 Hb_002249_020--Hb_003228_100 Hb_000788_030 Hb_000788_030 Hb_006846_170--Hb_000788_030 Hb_006846_170--Hb_003228_100 Hb_000975_210 Hb_000975_210 Hb_006846_170--Hb_000975_210 Hb_088584_010 Hb_088584_010 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140 Hb_033152_090 Hb_033152_090 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_007919_110 Hb_007919_110 Hb_003449_100--Hb_007919_110 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_000753_160 Hb_000753_160 Hb_003449_100--Hb_000753_160 Hb_000958_080 Hb_000958_080 Hb_003449_100--Hb_000958_080 Hb_009178_010 Hb_009178_010 Hb_003925_060--Hb_009178_010 Hb_001396_070 Hb_001396_070 Hb_003925_060--Hb_001396_070 Hb_003925_060--Hb_000640_190 Hb_001277_340 Hb_001277_340 Hb_003925_060--Hb_001277_340 Hb_002686_410 Hb_002686_410 Hb_003925_060--Hb_002686_410 Hb_006022_010--Hb_000300_550 Hb_000046_600 Hb_000046_600 Hb_006022_010--Hb_000046_600 Hb_006022_010--Hb_000640_190 Hb_007800_020 Hb_007800_020 Hb_006022_010--Hb_007800_020 Hb_001623_110 Hb_001623_110 Hb_006022_010--Hb_001623_110 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.2389 9.36102 15.8105 10.5987 5.44906 4.81739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49673 2.92061 3.84394 4.2444 8.28071

CAGE analysis