Hb_001396_070

Information

Type -
Description -
Location Contig1396: 39618-40463
Sequence    

Annotation

kegg
ID rcu:RCOM_1079250
description hypothetical protein
nr
ID XP_002514883.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10739: 39330-39435 , PASA_asmbl_10740: 39464-40596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003925_060 0.0752176019 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
3 Hb_000640_190 0.0955895393 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
4 Hb_033152_090 0.0999947814 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
5 Hb_000603_190 0.1036986994 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
6 Hb_011930_100 0.1040508106 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
7 Hb_002248_130 0.1063165317 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
8 Hb_000045_160 0.1089611703 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
9 Hb_000261_280 0.1131723569 - - BnaA10g23810D [Brassica napus]
10 Hb_000258_420 0.1140200984 - - sucrose transporter 2A [Hevea brasiliensis]
11 Hb_000853_220 0.1161375695 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
12 Hb_000805_200 0.1163933706 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
13 Hb_002249_020 0.1166872581 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
14 Hb_000815_310 0.116746416 - - protein kinase, putative [Ricinus communis]
15 Hb_006615_030 0.1171798663 - - prolyl oligopeptidase family protein [Populus trichocarpa]
16 Hb_003777_130 0.1198924421 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
17 Hb_007416_260 0.1234155358 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
18 Hb_000179_190 0.1235168024 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
19 Hb_001582_020 0.1241251833 - - plastid acyl-ACP thioesterase [Vernicia fordii]
20 Hb_001009_120 0.1249972757 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_070 Hb_001396_070 Hb_003925_060 Hb_003925_060 Hb_001396_070--Hb_003925_060 Hb_000640_190 Hb_000640_190 Hb_001396_070--Hb_000640_190 Hb_033152_090 Hb_033152_090 Hb_001396_070--Hb_033152_090 Hb_000603_190 Hb_000603_190 Hb_001396_070--Hb_000603_190 Hb_011930_100 Hb_011930_100 Hb_001396_070--Hb_011930_100 Hb_002248_130 Hb_002248_130 Hb_001396_070--Hb_002248_130 Hb_009178_010 Hb_009178_010 Hb_003925_060--Hb_009178_010 Hb_003925_060--Hb_000640_190 Hb_002249_020 Hb_002249_020 Hb_003925_060--Hb_002249_020 Hb_001277_340 Hb_001277_340 Hb_003925_060--Hb_001277_340 Hb_002686_410 Hb_002686_410 Hb_003925_060--Hb_002686_410 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_000640_190--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_000045_160 Hb_000045_160 Hb_000640_190--Hb_000045_160 Hb_000258_420 Hb_000258_420 Hb_033152_090--Hb_000258_420 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040 Hb_000815_310 Hb_000815_310 Hb_033152_090--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_033152_090--Hb_003777_130 Hb_000179_190 Hb_000179_190 Hb_000603_190--Hb_000179_190 Hb_000673_010 Hb_000673_010 Hb_000603_190--Hb_000673_010 Hb_008642_060 Hb_008642_060 Hb_000603_190--Hb_008642_060 Hb_000603_190--Hb_003925_060 Hb_000008_280 Hb_000008_280 Hb_000603_190--Hb_000008_280 Hb_000603_190--Hb_002248_130 Hb_011930_100--Hb_000045_160 Hb_011930_100--Hb_000815_310 Hb_011930_100--Hb_003777_130 Hb_011930_100--Hb_000640_190 Hb_011930_100--Hb_033152_090 Hb_006615_030 Hb_006615_030 Hb_002248_130--Hb_006615_030 Hb_003540_250 Hb_003540_250 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_002248_130--Hb_000179_190 Hb_017214_040 Hb_017214_040 Hb_002248_130--Hb_017214_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5194 44.524 44.8244 31.0957 14.7558 14.7254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33619 11.6363 4.75038 8.50603 28.5587

CAGE analysis