Hb_011930_100

Information

Type -
Description -
Location Contig11930: 72976-74864
Sequence    

Annotation

kegg
ID rcu:RCOM_0698930
description Curved DNA-binding protein, putative
nr
ID XP_012091968.1
description PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
swissprot
ID P59910
description DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1
trembl
ID A0A067JMM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21716 PE=4 SV=1
Gene Ontology
ID GO:0005737
description dnaj heat shock family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05712: 73048-74895 , PASA_asmbl_05713: 73037-74895 , PASA_asmbl_05714: 73789-74116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_100 0.0 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
2 Hb_000045_160 0.0719389631 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
3 Hb_000815_310 0.0948377959 - - protein kinase, putative [Ricinus communis]
4 Hb_003777_130 0.0953167284 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
5 Hb_000640_190 0.1009876492 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
6 Hb_001396_070 0.1040508106 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033152_090 0.1081155069 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
8 Hb_003177_070 0.1088268143 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
9 Hb_002248_120 0.1099447603 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
10 Hb_000042_110 0.1122286762 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
11 Hb_003090_160 0.115617262 - - -
12 Hb_088584_010 0.1164258798 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
13 Hb_000631_090 0.1181087515 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
14 Hb_000853_220 0.1183524449 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
15 Hb_006022_010 0.1196235857 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
16 Hb_003540_250 0.1220862716 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
17 Hb_005885_030 0.122092701 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_000529_130 0.1223646619 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
19 Hb_005403_010 0.1224116949 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
20 Hb_000671_030 0.1235236496 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]

Gene co-expression network

sample Hb_011930_100 Hb_011930_100 Hb_000045_160 Hb_000045_160 Hb_011930_100--Hb_000045_160 Hb_000815_310 Hb_000815_310 Hb_011930_100--Hb_000815_310 Hb_003777_130 Hb_003777_130 Hb_011930_100--Hb_003777_130 Hb_000640_190 Hb_000640_190 Hb_011930_100--Hb_000640_190 Hb_001396_070 Hb_001396_070 Hb_011930_100--Hb_001396_070 Hb_033152_090 Hb_033152_090 Hb_011930_100--Hb_033152_090 Hb_000045_160--Hb_000640_190 Hb_000045_160--Hb_033152_090 Hb_088584_010 Hb_088584_010 Hb_000045_160--Hb_088584_010 Hb_002249_020 Hb_002249_020 Hb_000045_160--Hb_002249_020 Hb_000045_160--Hb_000815_310 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_000815_310--Hb_003777_130 Hb_000815_310--Hb_033152_090 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_000258_420 Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_004375_110 Hb_004375_110 Hb_003777_130--Hb_004375_110 Hb_003777_130--Hb_033152_090 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_003777_130--Hb_000640_190 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_001009_120 Hb_001009_120 Hb_000640_190--Hb_001009_120 Hb_000640_190--Hb_002249_020 Hb_000300_550 Hb_000300_550 Hb_000640_190--Hb_000300_550 Hb_003925_060 Hb_003925_060 Hb_001396_070--Hb_003925_060 Hb_001396_070--Hb_000640_190 Hb_001396_070--Hb_033152_090 Hb_000603_190 Hb_000603_190 Hb_001396_070--Hb_000603_190 Hb_002248_130 Hb_002248_130 Hb_001396_070--Hb_002248_130 Hb_033152_090--Hb_000258_420 Hb_033152_090--Hb_001009_120 Hb_000956_040 Hb_000956_040 Hb_033152_090--Hb_000956_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2092 40.424 33.9263 34.7045 10.5368 12.9485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88892 4.0574 7.41394 8.55185 26.2934

CAGE analysis