Hb_004375_110

Information

Type -
Description -
Location Contig4375: 82137-95628
Sequence    

Annotation

kegg
ID vvi:100262427
description probable ATP-dependent RNA helicase DHX37
nr
ID XP_012072580.1
description PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
swissprot
ID Q38846
description Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1
trembl
ID A0A067KP28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05769 PE=4 SV=1
Gene Ontology
ID GO:0005840
description probable atp-dependent rna helicase dhx37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42526: 82139-86830 , PASA_asmbl_42527: 86021-86760 , PASA_asmbl_42528: 88463-89270 , PASA_asmbl_42529: 89446-90692 , PASA_asmbl_42530: 90951-91335 , PASA_asmbl_42531: 91421-93738 , PASA_asmbl_42532: 93847-95174 , PASA_asmbl_42533: 94397-95551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004375_110 0.0 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
2 Hb_009372_020 0.0668272143 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
3 Hb_003777_130 0.0683754347 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
4 Hb_000664_090 0.0724244114 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
5 Hb_008165_020 0.07448462 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_000015_200 0.0775922084 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
7 Hb_000034_110 0.0778515125 - - sentrin/sumo-specific protease, putative [Ricinus communis]
8 Hb_013726_050 0.0778621324 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
9 Hb_000015_090 0.0804493457 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
10 Hb_000452_030 0.0851199161 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
11 Hb_001414_010 0.0867478573 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
12 Hb_000270_700 0.0884125967 - - PREDICTED: protease Do-like 9 [Populus euphratica]
13 Hb_000197_180 0.0893452567 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
14 Hb_060094_010 0.0905632473 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_002965_050 0.0909807619 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
16 Hb_003964_110 0.0916611654 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
17 Hb_000331_100 0.0928523861 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
18 Hb_002304_050 0.0938305042 - - pyruvate kinase, putative [Ricinus communis]
19 Hb_001159_060 0.0948744217 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
20 Hb_002272_240 0.0949428671 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_004375_110 Hb_004375_110 Hb_009372_020 Hb_009372_020 Hb_004375_110--Hb_009372_020 Hb_003777_130 Hb_003777_130 Hb_004375_110--Hb_003777_130 Hb_000664_090 Hb_000664_090 Hb_004375_110--Hb_000664_090 Hb_008165_020 Hb_008165_020 Hb_004375_110--Hb_008165_020 Hb_000015_200 Hb_000015_200 Hb_004375_110--Hb_000015_200 Hb_000034_110 Hb_000034_110 Hb_004375_110--Hb_000034_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_000111_370 Hb_000111_370 Hb_009372_020--Hb_000111_370 Hb_009372_020--Hb_008165_020 Hb_003964_110 Hb_003964_110 Hb_009372_020--Hb_003964_110 Hb_000258_420 Hb_000258_420 Hb_003777_130--Hb_000258_420 Hb_000815_310 Hb_000815_310 Hb_003777_130--Hb_000815_310 Hb_033152_090 Hb_033152_090 Hb_003777_130--Hb_033152_090 Hb_000671_030 Hb_000671_030 Hb_003777_130--Hb_000671_030 Hb_000640_190 Hb_000640_190 Hb_003777_130--Hb_000640_190 Hb_048476_080 Hb_048476_080 Hb_000664_090--Hb_048476_080 Hb_000664_090--Hb_008165_020 Hb_000015_090 Hb_000015_090 Hb_000664_090--Hb_000015_090 Hb_001507_050 Hb_001507_050 Hb_000664_090--Hb_001507_050 Hb_000844_050 Hb_000844_050 Hb_000664_090--Hb_000844_050 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_001414_010 Hb_001414_010 Hb_008165_020--Hb_001414_010 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_003581_130 Hb_003581_130 Hb_000015_200--Hb_003581_130 Hb_000015_200--Hb_001507_050 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_000015_200--Hb_001414_010 Hb_000452_030 Hb_000452_030 Hb_000015_200--Hb_000452_030 Hb_000270_700 Hb_000270_700 Hb_000034_110--Hb_000270_700 Hb_000956_040 Hb_000956_040 Hb_000034_110--Hb_000956_040 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_009178_010 Hb_009178_010 Hb_000034_110--Hb_009178_010 Hb_002686_410 Hb_002686_410 Hb_000034_110--Hb_002686_410 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62156 20.9101 17.7096 20.4916 7.40127 4.6449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88944 5.38894 6.77216 11.2928 15.1648

CAGE analysis