Hb_000452_030

Information

Type -
Description -
Location Contig452: 46472-50404
Sequence    

Annotation

kegg
ID rcu:RCOM_0507270
description Protein phosphatase 1 regulatory subunit, putative
nr
ID XP_002522717.1
description Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
swissprot
ID Q9D5E4
description Leucine-rich repeat-containing protein 48 OS=Mus musculus GN=Lrrc48 PE=2 SV=1
trembl
ID B9S9P8
description Protein phosphatase 1 regulatory subunit, putative OS=Ricinus communis GN=RCOM_0507270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43212: 46589-50342 , PASA_asmbl_43213: 46527-50195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000452_030 0.0 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
2 Hb_000015_090 0.057788163 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
3 Hb_003687_130 0.0635697103 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
4 Hb_002259_170 0.0741250668 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
5 Hb_000979_140 0.079144925 - - kinase family protein [Populus trichocarpa]
6 Hb_000015_200 0.0828849223 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
7 Hb_111552_010 0.0847905729 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
8 Hb_004375_110 0.0851199161 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
9 Hb_002876_210 0.0861875129 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
10 Hb_009288_010 0.0879988755 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_004774_090 0.0882132484 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
12 Hb_002965_050 0.0936792978 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
13 Hb_003581_130 0.0941367228 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_003725_010 0.0942904892 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
15 Hb_000137_010 0.0962532615 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
16 Hb_001865_100 0.0970851021 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
17 Hb_000711_010 0.0979719549 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
18 Hb_001766_070 0.0984142207 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013726_050 0.0999720179 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
20 Hb_000088_260 0.1012274122 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]

Gene co-expression network

sample Hb_000452_030 Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_000452_030--Hb_000015_090 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_002259_170 Hb_002259_170 Hb_000452_030--Hb_002259_170 Hb_000979_140 Hb_000979_140 Hb_000452_030--Hb_000979_140 Hb_000015_200 Hb_000015_200 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000015_090--Hb_004375_110 Hb_003725_010 Hb_003725_010 Hb_000015_090--Hb_003725_010 Hb_000015_090--Hb_000015_200 Hb_000015_090--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_003687_130--Hb_001865_100 Hb_003687_130--Hb_000015_200 Hb_001766_070 Hb_001766_070 Hb_003687_130--Hb_001766_070 Hb_003687_130--Hb_000015_090 Hb_003581_130 Hb_003581_130 Hb_003687_130--Hb_003581_130 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_001511_090 Hb_001511_090 Hb_002259_170--Hb_001511_090 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_000015_200--Hb_003581_130 Hb_001507_050 Hb_001507_050 Hb_000015_200--Hb_001507_050 Hb_000015_200--Hb_004375_110 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_001414_010 Hb_001414_010 Hb_000015_200--Hb_001414_010 Hb_004774_090 Hb_004774_090 Hb_111552_010--Hb_004774_090 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1101 51.6272 49.5853 43.2569 10.1188 10.853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.78533 15.999 22.1586 24.3679 48.3438

CAGE analysis