Hb_003687_130

Information

Type -
Description -
Location Contig3687: 89626-95093
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002881mg
description hypothetical protein
nr
ID XP_012069851.1
description PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
swissprot
ID Q940J9
description Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=2 SV=1
trembl
ID A0A067L766
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02343 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37927: 92234-92634 , PASA_asmbl_37928: 89694-94784 , PASA_asmbl_37929: 90376-90607 , PASA_asmbl_37931: 93695-93789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_130 0.0 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
2 Hb_000452_030 0.0635697103 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
3 Hb_001865_100 0.08002278 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
4 Hb_000015_200 0.0964569594 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
5 Hb_001766_070 0.0985262014 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000015_090 0.0990868238 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
7 Hb_003581_130 0.0995391809 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000979_140 0.1013896738 - - kinase family protein [Populus trichocarpa]
9 Hb_003408_060 0.1027480587 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
10 Hb_003216_130 0.1029861975 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
11 Hb_004052_110 0.1036052371 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
12 Hb_013726_050 0.1050125404 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
13 Hb_004375_110 0.105694337 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
14 Hb_002259_170 0.1086204088 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
15 Hb_001998_210 0.1089986277 - - unnamed protein product [Coffea canephora]
16 Hb_116349_120 0.1113059521 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_002259_220 0.1117178142 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
18 Hb_111552_010 0.1119212749 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
19 Hb_004994_350 0.1125725677 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
20 Hb_001178_030 0.1137483846 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003687_130 Hb_003687_130 Hb_000452_030 Hb_000452_030 Hb_003687_130--Hb_000452_030 Hb_001865_100 Hb_001865_100 Hb_003687_130--Hb_001865_100 Hb_000015_200 Hb_000015_200 Hb_003687_130--Hb_000015_200 Hb_001766_070 Hb_001766_070 Hb_003687_130--Hb_001766_070 Hb_000015_090 Hb_000015_090 Hb_003687_130--Hb_000015_090 Hb_003581_130 Hb_003581_130 Hb_003687_130--Hb_003581_130 Hb_000452_030--Hb_000015_090 Hb_002259_170 Hb_002259_170 Hb_000452_030--Hb_002259_170 Hb_000979_140 Hb_000979_140 Hb_000452_030--Hb_000979_140 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_004943_040 Hb_004943_040 Hb_001865_100--Hb_004943_040 Hb_004052_110 Hb_004052_110 Hb_001865_100--Hb_004052_110 Hb_000665_200 Hb_000665_200 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_002259_220 Hb_002259_220 Hb_001865_100--Hb_002259_220 Hb_000015_200--Hb_003581_130 Hb_001507_050 Hb_001507_050 Hb_000015_200--Hb_001507_050 Hb_004375_110 Hb_004375_110 Hb_000015_200--Hb_004375_110 Hb_002686_140 Hb_002686_140 Hb_000015_200--Hb_002686_140 Hb_001414_010 Hb_001414_010 Hb_000015_200--Hb_001414_010 Hb_000673_010 Hb_000673_010 Hb_001766_070--Hb_000673_010 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_000137_010 Hb_000137_010 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001409_060 Hb_001409_060 Hb_001766_070--Hb_001409_060 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_000015_090--Hb_004375_110 Hb_003725_010 Hb_003725_010 Hb_000015_090--Hb_003725_010 Hb_000015_090--Hb_000015_200 Hb_000015_090--Hb_000979_140 Hb_003581_130--Hb_000452_030 Hb_003581_130--Hb_000015_090 Hb_000340_220 Hb_000340_220 Hb_003581_130--Hb_000340_220 Hb_002349_030 Hb_002349_030 Hb_003581_130--Hb_002349_030 Hb_000369_080 Hb_000369_080 Hb_003581_130--Hb_000369_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6179 35.2815 36.9119 36.2674 8.07167 5.76203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15995 8.20887 15.2018 15.1165 41.2279

CAGE analysis