Hb_001865_100

Information

Type -
Description -
Location Contig1865: 127668-135223
Sequence    

Annotation

kegg
ID rcu:RCOM_0464870
description amino acid binding protein, putative
nr
ID XP_012089514.1
description PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
swissprot
ID O80644
description ACT domain-containing protein ACR9 OS=Arabidopsis thaliana GN=ACR9 PE=2 SV=1
trembl
ID A0A067L999
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01492 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18432: 127658-134887 , PASA_asmbl_18433: 130682-130868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_100 0.0 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
2 Hb_004943_040 0.0790052749 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
3 Hb_004052_110 0.0795663562 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
4 Hb_003687_130 0.08002278 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
5 Hb_000665_200 0.0860352705 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_000510_190 0.0963842989 - - glutathione reductase [Hevea brasiliensis]
7 Hb_002259_220 0.0964224692 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
8 Hb_000979_140 0.096633119 - - kinase family protein [Populus trichocarpa]
9 Hb_000414_080 0.0968350299 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
10 Hb_000452_030 0.0970851021 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
11 Hb_001117_110 0.0976169028 - - PREDICTED: dynamin-2A [Jatropha curcas]
12 Hb_012762_040 0.099098984 - - big map kinase/bmk, putative [Ricinus communis]
13 Hb_003216_130 0.1008297503 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
14 Hb_000570_020 0.1031941198 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
15 Hb_000015_090 0.1041282732 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
16 Hb_116349_120 0.1047274282 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000197_180 0.1050305344 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
18 Hb_003581_130 0.1068070979 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_001221_300 0.1087046614 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
20 Hb_001998_210 0.1089535197 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001865_100 Hb_001865_100 Hb_004943_040 Hb_004943_040 Hb_001865_100--Hb_004943_040 Hb_004052_110 Hb_004052_110 Hb_001865_100--Hb_004052_110 Hb_003687_130 Hb_003687_130 Hb_001865_100--Hb_003687_130 Hb_000665_200 Hb_000665_200 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_002259_220 Hb_002259_220 Hb_001865_100--Hb_002259_220 Hb_000570_020 Hb_000570_020 Hb_004943_040--Hb_000570_020 Hb_000283_140 Hb_000283_140 Hb_004943_040--Hb_000283_140 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_004052_110--Hb_002259_220 Hb_001059_060 Hb_001059_060 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_011188_010 Hb_011188_010 Hb_004052_110--Hb_011188_010 Hb_000452_030 Hb_000452_030 Hb_003687_130--Hb_000452_030 Hb_000015_200 Hb_000015_200 Hb_003687_130--Hb_000015_200 Hb_001766_070 Hb_001766_070 Hb_003687_130--Hb_001766_070 Hb_000015_090 Hb_000015_090 Hb_003687_130--Hb_000015_090 Hb_003581_130 Hb_003581_130 Hb_003687_130--Hb_003581_130 Hb_002026_030 Hb_002026_030 Hb_000665_200--Hb_002026_030 Hb_001969_130 Hb_001969_130 Hb_000665_200--Hb_001969_130 Hb_000665_200--Hb_004052_110 Hb_001221_300 Hb_001221_300 Hb_000665_200--Hb_001221_300 Hb_000066_040 Hb_000066_040 Hb_000665_200--Hb_000066_040 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_002259_220--Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_002259_220--Hb_009078_020 Hb_002259_220--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_002259_220--Hb_000477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52246 13.0448 17.5829 17.1453 3.11184 2.78104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51146 3.25825 5.3178 8.20039 19.7615

CAGE analysis