Hb_002026_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2026: 22732-28476
Sequence    

Annotation

kegg
ID rcu:RCOM_1687070
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012086875.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067JRH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20574 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase yoda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20614: 27126-28470 , PASA_asmbl_20615: 28489-30315 , PASA_asmbl_20616: 28617-28828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_030 0.0 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
2 Hb_000665_200 0.0827565848 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_001969_130 0.0943275038 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
4 Hb_001124_140 0.0959817802 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
5 Hb_004052_110 0.1038391757 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
6 Hb_002675_080 0.1047945039 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
7 Hb_004678_010 0.1050280127 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
8 Hb_003912_080 0.1069446651 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_004943_040 0.108843024 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
10 Hb_025045_010 0.1101149407 - - catalytic, putative [Ricinus communis]
11 Hb_022425_050 0.1112339164 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
12 Hb_000635_050 0.1113737483 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_000414_080 0.1124149187 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
14 Hb_000066_040 0.1133458392 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
15 Hb_000042_050 0.1160692646 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
16 Hb_001865_100 0.1170663517 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
17 Hb_000445_370 0.1225013601 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
18 Hb_001059_060 0.1238852458 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
19 Hb_001053_020 0.124269874 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
20 Hb_000283_140 0.1257825301 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002026_030 Hb_002026_030 Hb_000665_200 Hb_000665_200 Hb_002026_030--Hb_000665_200 Hb_001969_130 Hb_001969_130 Hb_002026_030--Hb_001969_130 Hb_001124_140 Hb_001124_140 Hb_002026_030--Hb_001124_140 Hb_004052_110 Hb_004052_110 Hb_002026_030--Hb_004052_110 Hb_002675_080 Hb_002675_080 Hb_002026_030--Hb_002675_080 Hb_004678_010 Hb_004678_010 Hb_002026_030--Hb_004678_010 Hb_001865_100 Hb_001865_100 Hb_000665_200--Hb_001865_100 Hb_000665_200--Hb_001969_130 Hb_000665_200--Hb_004052_110 Hb_001221_300 Hb_001221_300 Hb_000665_200--Hb_001221_300 Hb_000066_040 Hb_000066_040 Hb_000665_200--Hb_000066_040 Hb_001969_130--Hb_001124_140 Hb_022425_050 Hb_022425_050 Hb_001969_130--Hb_022425_050 Hb_001969_130--Hb_000066_040 Hb_001969_130--Hb_001221_300 Hb_005731_100 Hb_005731_100 Hb_001124_140--Hb_005731_100 Hb_001124_140--Hb_022425_050 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_001059_060 Hb_001059_060 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_011188_010 Hb_011188_010 Hb_004052_110--Hb_011188_010 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_017098_040 Hb_017098_040 Hb_004678_010--Hb_017098_040 Hb_003912_080 Hb_003912_080 Hb_004678_010--Hb_003912_080 Hb_000635_050 Hb_000635_050 Hb_004678_010--Hb_000635_050 Hb_001141_060 Hb_001141_060 Hb_004678_010--Hb_001141_060 Hb_004678_010--Hb_002675_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250696 2.38764 2.79333 3.07481 0.328719 0.47286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426553 0.227771 0.389535 1.12243 4.31885

CAGE analysis