Hb_004678_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig4678: 18276-22035
Sequence    

Annotation

kegg
ID rcu:RCOM_1287290
description Salt-tolerance protein, putative
nr
ID XP_002534139.1
description Salt-tolerance protein, putative [Ricinus communis]
swissprot
ID Q9SID1
description B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2
trembl
ID B9T7C0
description Salt-tolerance protein, putative OS=Ricinus communis GN=RCOM_1287290 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44131: 18483-22026 , PASA_asmbl_44132: 19288-19485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004678_010 0.0 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
2 Hb_017098_040 0.0869264686 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
3 Hb_003912_080 0.0994179147 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_002026_030 0.1050280127 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_000635_050 0.107731271 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
6 Hb_001141_060 0.1194868503 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
7 Hb_002675_080 0.1223154944 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
8 Hb_002909_100 0.1254823608 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
9 Hb_005488_130 0.1260550207 - - transporter, putative [Ricinus communis]
10 Hb_000665_200 0.1263267791 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_004052_110 0.1280023972 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
12 Hb_001948_090 0.1285589235 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
13 Hb_000753_120 0.1290271266 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_009449_100 0.1300134 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
15 Hb_000556_070 0.1329665686 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
16 Hb_000357_070 0.1356333226 - - -
17 Hb_000110_260 0.1360405185 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
18 Hb_000230_470 0.13613239 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
19 Hb_021409_110 0.1367686442 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_000227_280 0.1383941165 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]

Gene co-expression network

sample Hb_004678_010 Hb_004678_010 Hb_017098_040 Hb_017098_040 Hb_004678_010--Hb_017098_040 Hb_003912_080 Hb_003912_080 Hb_004678_010--Hb_003912_080 Hb_002026_030 Hb_002026_030 Hb_004678_010--Hb_002026_030 Hb_000635_050 Hb_000635_050 Hb_004678_010--Hb_000635_050 Hb_001141_060 Hb_001141_060 Hb_004678_010--Hb_001141_060 Hb_002675_080 Hb_002675_080 Hb_004678_010--Hb_002675_080 Hb_017098_040--Hb_002675_080 Hb_017098_040--Hb_000635_050 Hb_000357_070 Hb_000357_070 Hb_017098_040--Hb_000357_070 Hb_000915_130 Hb_000915_130 Hb_017098_040--Hb_000915_130 Hb_000283_140 Hb_000283_140 Hb_017098_040--Hb_000283_140 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_003912_080--Hb_002026_030 Hb_000665_200 Hb_000665_200 Hb_002026_030--Hb_000665_200 Hb_001969_130 Hb_001969_130 Hb_002026_030--Hb_001969_130 Hb_001124_140 Hb_001124_140 Hb_002026_030--Hb_001124_140 Hb_004052_110 Hb_004052_110 Hb_002026_030--Hb_004052_110 Hb_002026_030--Hb_002675_080 Hb_000635_050--Hb_000357_070 Hb_000635_050--Hb_002026_030 Hb_007765_130 Hb_007765_130 Hb_000635_050--Hb_007765_130 Hb_003055_070 Hb_003055_070 Hb_000635_050--Hb_003055_070 Hb_001141_060--Hb_001948_090 Hb_001141_060--Hb_003912_080 Hb_000035_060 Hb_000035_060 Hb_001141_060--Hb_000035_060 Hb_172676_010 Hb_172676_010 Hb_001141_060--Hb_172676_010 Hb_000320_270 Hb_000320_270 Hb_001141_060--Hb_000320_270 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3908 30.0525 33.0532 34.0402 2.84982 4.47644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81603 4.18932 3.09524 6.3881 37.5085

CAGE analysis