Hb_001124_140

Information

Type -
Description -
Location Contig1124: 180072-182360
Sequence    

Annotation

kegg
ID rcu:RCOM_0679700
description Beta-amylase, putative (EC:3.2.1.2)
nr
ID XP_012069407.1
description PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
swissprot
ID Q8VYW2
description Inactive beta-amylase 9 OS=Arabidopsis thaliana GN=BAM9 PE=2 SV=1
trembl
ID A0A067L692
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02023 PE=3 SV=1
Gene Ontology
ID GO:0016161
description inactive beta-amylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03815: 180119-182513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_140 0.0 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
2 Hb_005731_100 0.0781973792 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_001969_130 0.0929751699 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
4 Hb_022425_050 0.0937051041 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
5 Hb_002026_030 0.0959817802 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_001865_010 0.1007642115 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
7 Hb_004129_010 0.1113268429 - - aspartate aminotransferase, putative [Ricinus communis]
8 Hb_000665_200 0.1138511066 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_001754_120 0.1149887013 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
10 Hb_004052_110 0.117262325 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
11 Hb_005588_120 0.11824149 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000334_050 0.1185033536 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
13 Hb_009193_010 0.1204084265 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
14 Hb_005305_120 0.1206378549 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
15 Hb_067664_010 0.1223558732 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_026698_020 0.124219295 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_001514_240 0.1264075013 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
18 Hb_013968_010 0.1265075182 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
19 Hb_009449_100 0.1266045159 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
20 Hb_000066_040 0.1273744867 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]

Gene co-expression network

sample Hb_001124_140 Hb_001124_140 Hb_005731_100 Hb_005731_100 Hb_001124_140--Hb_005731_100 Hb_001969_130 Hb_001969_130 Hb_001124_140--Hb_001969_130 Hb_022425_050 Hb_022425_050 Hb_001124_140--Hb_022425_050 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_005731_100--Hb_022425_050 Hb_000046_480 Hb_000046_480 Hb_005731_100--Hb_000046_480 Hb_001153_100 Hb_001153_100 Hb_005731_100--Hb_001153_100 Hb_000334_050 Hb_000334_050 Hb_005731_100--Hb_000334_050 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001969_130--Hb_002026_030 Hb_001969_130--Hb_022425_050 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300 Hb_022425_050--Hb_001865_010 Hb_004223_270 Hb_004223_270 Hb_022425_050--Hb_004223_270 Hb_022425_050--Hb_000334_050 Hb_002026_030--Hb_000665_200 Hb_004052_110 Hb_004052_110 Hb_002026_030--Hb_004052_110 Hb_002675_080 Hb_002675_080 Hb_002026_030--Hb_002675_080 Hb_004678_010 Hb_004678_010 Hb_002026_030--Hb_004678_010 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_005695_080 Hb_005695_080 Hb_001865_010--Hb_005695_080 Hb_001865_010--Hb_001969_130 Hb_001425_010 Hb_001425_010 Hb_001865_010--Hb_001425_010 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50446 13.7737 16.4808 15.3662 0.78085 1.63748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11119 1.81221 2.94917 10.1021 23.7825

CAGE analysis